Transcript Information: S_Transcript_301421.p1


Annotated TAIR IDAT5G66520.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26551879-26553741 | Forward length=620
E-Value7E-108
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59140002744845
Replicate 20.53114123008832
Replicate 30.51229822454446
Condition 2: 8 Hour
Replicate 11.3427097607084
Replicate 21.6986033226459
Replicate 31.6184254663041
Condition 3: 24 Hour
Replicate 10.56634883123763
Replicate 20.50364025725216
Replicate 30.28024493783462


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_301421.p1 GENE.S_Transcript_301421~~S_Transcript_301421.p1 ORF type:complete len:540 (+),score=92.96,PPR_2|PF13041.2|7.5e-11,PPR_2|PF13041.2|8e+03,PPR_2|PF13041.2|4.3e-10,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|8.2e-11,PPR_2|PF13041.2|0.034,PPR_2|PF13041.2|0.43,PPR_2|PF13041.2|1.2e+03,PPR|PF01535.16|5.1e-05,PPR|PF01535.16|2e+03,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|3.3e-10,PPR|PF01535.16|1.5e-08,PPR|PF01535.16|6.2e+03,PPR|PF01535.16|0.00058,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.0064,PPR|PF01535.16|8.3e+03,PPR|PF01535.16|39,PPR_1|PF12854.3|99,PPR_1|PF12854.3|74,PPR_1|PF12854.3|1.4e-09,PPR_1|PF12854.3|0.00021,PPR_1|PF12854.3|4.2,PPR_1|PF12854.3|6.2e-05,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.00045,PPR_3|PF13812.2|50,PPR_3|PF13812.2|6.4e+03,PPR_3|PF13812.2|8.2e-06,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|7.1,PPR_3|PF13812.2|0.00097,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|35 S_Transcript_301421:56-1675(+)
ATGACTTCTCTTGGCTCCAAGTATTTGAAATCTAGCAAATTTGTTCTATCTCTCCTTGAACACCACCAGTGTCTCTCCATCCCTCAACTCAAGCAACTCCACTGTCACCTAACAATCACTGGCACCATTTCTGATTCCTTTGCAGCTGGAAAACTCATTTCTTCCTTTGCAAACCATCCCACCCATCTATCATATGCTTACCACCTCCTTCTTCGAGTTCCGAATCGCTCCACTTACATGTGGAACTCCCTGATCAAAATTTTCAGTGAAAAAAACGAACTCATCAAGGCATTGTCTCTTTATAAGGATATGTTAGATTCTGGGTCTCACCCAAATAGTCATACTTTCTCATTCCTGATTAAAGCTTGCATTGATCTATGTGATTTATCACTTGGGTTGATGTTACATTCCCAGTCTATTAAGTTGGGATGGGATGGTTATGACTTTGTGCAAAATGGGTTGATTCATTTGTATGCTATTTGTAATGCGGTTGATTTGGGTCGTAAGCTGTTTGATGCTAGTTCATGCAAGGATGTTGTCACTTGGACTGCTATGATCAATGGGTATGTGAAAGAGGGTCGGGTCGAGGTTGCACGAGAGCTGTTCGATGAAATGCCTGAGAGAAATGTGGTTTCTTGGGGTGTAATGATTACAGGGTATGCTCAAATGGGGTTCTTTAAAGAGGCTCTTGAGCTCTTTTATGAGATGCAGGTTTCTGGGTTTCGGCCTAATCATGCTTCCATTGTGGGGGCGCTCACGGCTTGTGCTTCGCTTGGGGCTTTGGAGCAAGGGAGGTGGATACATGCATACATGGATCGGATTGGGATGGGTTTGGATGCCAAATTAGGGACTGCCCTTGTTGATATGTATGCGAAATGTGGGTGCATTGAGATGGCGAGTAGTGTGTTTGAGGACATGAGATGTAGGGATGTGTTCGTTTTCACTTCTTTGATATCTGGCCTATCGAACCATGGGCTGAGTAAGAGAGCAATCCAGTTATTCAGAAGGATGCAGAACGAAGGGATTAGTCCAAATGGGGTTACATTCATTTGTGTCCTAGCTGCATGTAGTCGAATGGGTTTGGTAGATGAGGGGTTGCAAATATTTGAGAGCATGAGAGACCGATATGGGATTGACCCGGGGATTGAGCACTATGGCTGTTTGGTTGACCTCCTAGCGAGAGCAGGAATGCTGCAAGAGGCAGAACAGCTTGTGAGGAAGATGTCAATGGTACCGGATTCTTATGTTTTAGGTGCATTACTTAATGCTTGTGAAGTTTATGGCAATGTCGCAATAGGGGAAGAGACGGTTAAGCAATTGATGGAGCAAGGTTTAGACTATAGTGGAGTTCATACCCTACTCTCGAATATTTATGCATCGGCAAACAAATGGGATGGAGTTGCCAAGGTAAGGGAGGCTATGGAAGAGAAGAACATGAGAAAGGAGCCAGGGTCCAGTTTGATTGAAGTAGATGGTGCTGTTTCCGAATTTGGTGCTGGACATAGGTCTCATTTGCTAATGGATGACATTATGTTGTCATTGCTTCAAATAGACAAGCACTTAAGGTCATTTTGGTTGGATCTTAATATTAAACGCAACATTGAAAGTACTTTGTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_301421.p1 GENE.S_Transcript_301421~~S_Transcript_301421.p1 ORF type:complete len:540 (+),score=92.96,PPR_2|PF13041.2|7.5e-11,PPR_2|PF13041.2|8e+03,PPR_2|PF13041.2|4.3e-10,PPR_2|PF13041.2|4.4e-08,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|8.2e-11,PPR_2|PF13041.2|0.034,PPR_2|PF13041.2|0.43,PPR_2|PF13041.2|1.2e+03,PPR|PF01535.16|5.1e-05,PPR|PF01535.16|2e+03,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|3.3e-10,PPR|PF01535.16|1.5e-08,PPR|PF01535.16|6.2e+03,PPR|PF01535.16|0.00058,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.0064,PPR|PF01535.16|8.3e+03,PPR|PF01535.16|39,PPR_1|PF12854.3|99,PPR_1|PF12854.3|74,PPR_1|PF12854.3|1.4e-09,PPR_1|PF12854.3|0.00021,PPR_1|PF12854.3|4.2,PPR_1|PF12854.3|6.2e-05,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.00045,PPR_3|PF13812.2|50,PPR_3|PF13812.2|6.4e+03,PPR_3|PF13812.2|8.2e-06,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|7.1,PPR_3|PF13812.2|0.00097,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|35 S_Transcript_301421:56-1675(+)
MTSLGSKYLKSSKFVLSLLEHHQCLSIPQLKQLHCHLTITGTISDSFAAGKLISSFANHPTHLSYAYHLLLRVPNRSTYMWNSLIKIFSEKNELIKALSLYKDMLDSGSHPNSHTFSFLIKACIDLCDLSLGLMLHSQSIKLGWDGYDFVQNGLIHLYAICNAVDLGRKLFDASSCKDVVTWTAMINGYVKEGRVEVARELFDEMPERNVVSWGVMITGYAQMGFFKEALELFYEMQVSGFRPNHASIVGALTACASLGALEQGRWIHAYMDRIGMGLDAKLGTALVDMYAKCGCIEMASSVFEDMRCRDVFVFTSLISGLSNHGLSKRAIQLFRRMQNEGISPNGVTFICVLAACSRMGLVDEGLQIFESMRDRYGIDPGIEHYGCLVDLLARAGMLQEAEQLVRKMSMVPDSYVLGALLNACEVYGNVAIGEETVKQLMEQGLDYSGVHTLLSNIYASANKWDGVAKVREAMEEKNMRKEPGSSLIEVDGAVSEFGAGHRSHLLMDDIMLSLLQIDKHLRSFWLDLNIKRNIESTLF*

Click here to download the sequence:
Link to NCBI Protein BLAST