Transcript Information: S_Transcript_302002.p1


Annotated TAIR IDAT1G68930.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:25918314-25920545 | Forward length=743
E-Value2.6e-319
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.31309413217859
Replicate 20.23072198230081
Replicate 30.096432606973075
Condition 2: 8 Hour
Replicate 11.1986820701134
Replicate 21.4037238362181
Replicate 31.6996950377828
Condition 3: 24 Hour
Replicate 10.34266483906814
Replicate 20.11850358994169
Replicate 30.56048987566925


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_302002.p1 GENE.S_Transcript_302002~~S_Transcript_302002.p1 ORF type:5prime_partial len:765 (+),score=100.58,PPR|PF01535.16|0.031,PPR|PF01535.16|0.0019,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|9.1e+02,PPR|PF01535.16|5.2,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|0.11,PPR|PF01535.16|12,PPR|PF01535.16|0.11,PPR|PF01535.16|7e-07,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|0.53,PPR|PF01535.16|0.00012,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|7.8,PPR_2|PF13041.2|2.5,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|8.6e-07,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|0.00047,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|2e+02,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.061,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|0.00075,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|0.022,PPR_1|PF12854.3|9.6e+02,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|1.7e-05,PPR_1|PF12854.3|44,PPR_1|PF12854.3|0.069,PPR_1|PF12854.3|2.9e+03,PPR_3|PF13812.2|1.2e+04,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|2.4e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|38,PPR_3|PF13812.2|12,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|0.094,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|0.00018,PPR_3|PF13812.2|65,PPR_3|PF13812.2|0.78,PPR_3|PF13812.2|1.3e+03,DYW_deaminase|PF14432.2|1.7e-36,TPR_14|PF13428.2|6.9e+03,TPR_14|PF13428.2|52,TPR_14|PF13428.2|1.5e+04,TPR_14|PF13428.2|2.6e+03,TPR_14|PF13428.2|9.3e+02,TPR_14|PF13428.2|5.6e+03,TPR_14|PF13428.2|0.91,TPR_14|PF13428.2|8e+03,TPR_14|PF13428.2|1.6e+03 S_Transcript_302002:2-2296(+)
TTAATTTCTCCAACTCCTTACGGACCTTTTTCCACAAGGTCCTCATGGTTCTTTCCCGCCAGTTTTACTATGTCAACTTCCAACTATTACTGTTCACTCCTCAAACATTGTCGCCAAACCCAGAACCTTAAACTCACAAAGAAGCTCCACTGCCTAATCATTAAAACCCACAAACACCCAGATACCTTTTTATCCAACAGTCTCATAAGCTCCTATAGTGAGCTTGGCAATCTGATCTATGCACGCCATGTGTTCGATAAAATGCCCCAACCAAACCCTTTCTCTTGGAACATCATGCTCTCTGCTTATTCAAATTCGGGTCATCTACGTGGTATGCTGGAAATATTTCAATCCATTCCTGTTAAGGATGGCATCTCATGGAACGCGTTTATTTCGGGGTATGCCAACCATGGAAGATTTCATGATGCTTTGAGGGCTTATAGAATAATGTTGGAGGAAGGAACCATGAATTTGAATAGGATAACTTTTTCAACAATGCTTATACTTTCTTCAGAGATGGGTTCTGTTGATTTGGGTAGGCAGCTTCATGGGCAAGTTCTGAAGTTCGGATTTCTTTCCTATATGTTTGTGGCTAATCCCCTGGTAGATATGTACTCAAAGTTGAGATTTGTGTATGACGCGAAACAGGTATTTGAAGAAGCTCCAGAAAGGAATTTGGTTATGCACAATACGATGATTTCAGGGTTTTCGCGTTGTGGGATGTTTGAAGAGTCATGCCGGTTACTAAGGAGTATGCCGGATAGAGATTCAATTACATGGACAAGTGTTATTACAGGATTAACTCAGAATGGGTTGGATAGGGAAGCTGTTGTGTTGAGAGAGATGAGGCAGGAAGGCTTTGATATGGACCAATTCACCTTTGGAAGTGTCTTGGCTGCTTGTGGGAGAATGGGAGCCTTGAAAGAAGGGTTGCAACTTCATGCTCATATAATCCAAACAGGTTACCAAGATAATATTTTTGTTGGAAGTGCACTTATTGACATGTATTGCAAGTGTAATAGCATAAGATGTGCAGAGATAATATTCAATGGGATGAGACACAAGAATACTGTCTCATGGACGGCAATGCTAGTTGGATATAGTCAGAACGGACATAGTGAAGAAGCTATTAGGATTTTCTGCAAGATGCAGAAAAACGCAATTGAACCAGACGATATTACACTTGGAAGTGTCATTAGCTCGTGTGCAGATTTAGCAAGTTTGGAGGAGGGTGTCCAATTTCATACTCGAGCTCTAGTCTCTGGTATTATATGTTCTGTTGCTGTTTCTAATGCACTCATTACCTTGTACGGAAGATGTGGAATGATAGAAGATTCCTTGAGGTTGTTCAAAGAGATGAAAGTCAAGGATGAAATTTCTTGGACAGCATTAATTTCTGGATATGCACAGTTTGGCAAAGCAAAGGAAGCAATCCATCTATTTGAGGAAATGCTTTCTCATGGGCTTAAGCCTGATGAAGCTACTTTTGTAGGAGTTCTGTCAGCATGCAGTAGAGCAGGCTTATTAGAGAAAGGACAGTTTTATTTTGAGACAATGGTGAAAGAACACAGTATAGTGGCAACTTCGGATCACTACACTTGCATGATCGACCTCTTCAGTCGTGCAGGGAAACTGGAAGAAGCCAAGAGTTTTATTTCCAAGATGCCTTTTGTTCCTGATGCAATCGGTTGGGGTACGTTGTTGAGTTCATGTAGATTTTATGGTAACATGGAAATTGCAATATGGGCTGCAGATTCTTTATTCGAACTGGAGCCCCAACACCCTGCAGGCTATGTCTTGCTTTCCAGTATCTATGCTGCTGAAGGAAAATGGGAACGTGTGGCTCAGCTGAGGAAGGGAATGAGGGATAAAGGGATAAGGAAAGATCCTGGATATAGTTGGATTAAGTTTAAGAATAAAGTGTACATTTTCTCTGCTGATGATCAGTCCAGCCCATATTTAGACCATATATATACTCAGCTGGAACAGTTAAACCTGAAAATGATCGAGGAAGGTTACATGCCTGATCTGAGCTCTGTGCTTCATGATGTTGAAGAATCTGAGAAAATAGGAATGCTGAAACATCACAGCGAGAGACTTGCCATTGTTTTCGGTTTGATGTTTATTCCACCTGGCTTCCCCATACGAGTGGTTAAGAATCTAAGGGTCTGTGGAGATTGTCACACTGCAACAAAATTTATTTCTAAAATTACCCAGAGAGAGATACTAGTACGAGATTCGGTCCGCTTTCACTTATTCAAAAATGGAACATGTTCATGTGGAGATTTCTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_302002.p1 GENE.S_Transcript_302002~~S_Transcript_302002.p1 ORF type:5prime_partial len:765 (+),score=100.58,PPR|PF01535.16|0.031,PPR|PF01535.16|0.0019,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|9.1e+02,PPR|PF01535.16|5.2,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|0.11,PPR|PF01535.16|12,PPR|PF01535.16|0.11,PPR|PF01535.16|7e-07,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|0.53,PPR|PF01535.16|0.00012,PPR|PF01535.16|3.2e+03,PPR|PF01535.16|7.8,PPR_2|PF13041.2|2.5,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|8.6e-07,PPR_2|PF13041.2|1.2e+03,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|0.00047,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|2e+02,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.061,PPR_1|PF12854.3|2.9e+03,PPR_1|PF12854.3|0.00075,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|0.022,PPR_1|PF12854.3|9.6e+02,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|1.7e-05,PPR_1|PF12854.3|44,PPR_1|PF12854.3|0.069,PPR_1|PF12854.3|2.9e+03,PPR_3|PF13812.2|1.2e+04,PPR_3|PF13812.2|6.2e+03,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|2.4e+03,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|38,PPR_3|PF13812.2|12,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|0.094,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|0.00018,PPR_3|PF13812.2|65,PPR_3|PF13812.2|0.78,PPR_3|PF13812.2|1.3e+03,DYW_deaminase|PF14432.2|1.7e-36,TPR_14|PF13428.2|6.9e+03,TPR_14|PF13428.2|52,TPR_14|PF13428.2|1.5e+04,TPR_14|PF13428.2|2.6e+03,TPR_14|PF13428.2|9.3e+02,TPR_14|PF13428.2|5.6e+03,TPR_14|PF13428.2|0.91,TPR_14|PF13428.2|8e+03,TPR_14|PF13428.2|1.6e+03 S_Transcript_302002:2-2296(+)
LISPTPYGPFSTRSSWFFPASFTMSTSNYYCSLLKHCRQTQNLKLTKKLHCLIIKTHKHPDTFLSNSLISSYSELGNLIYARHVFDKMPQPNPFSWNIMLSAYSNSGHLRGMLEIFQSIPVKDGISWNAFISGYANHGRFHDALRAYRIMLEEGTMNLNRITFSTMLILSSEMGSVDLGRQLHGQVLKFGFLSYMFVANPLVDMYSKLRFVYDAKQVFEEAPERNLVMHNTMISGFSRCGMFEESCRLLRSMPDRDSITWTSVITGLTQNGLDREAVVLREMRQEGFDMDQFTFGSVLAACGRMGALKEGLQLHAHIIQTGYQDNIFVGSALIDMYCKCNSIRCAEIIFNGMRHKNTVSWTAMLVGYSQNGHSEEAIRIFCKMQKNAIEPDDITLGSVISSCADLASLEEGVQFHTRALVSGIICSVAVSNALITLYGRCGMIEDSLRLFKEMKVKDEISWTALISGYAQFGKAKEAIHLFEEMLSHGLKPDEATFVGVLSACSRAGLLEKGQFYFETMVKEHSIVATSDHYTCMIDLFSRAGKLEEAKSFISKMPFVPDAIGWGTLLSSCRFYGNMEIAIWAADSLFELEPQHPAGYVLLSSIYAAEGKWERVAQLRKGMRDKGIRKDPGYSWIKFKNKVYIFSADDQSSPYLDHIYTQLEQLNLKMIEEGYMPDLSSVLHDVEESEKIGMLKHHSERLAIVFGLMFIPPGFPIRVVKNLRVCGDCHTATKFISKITQREILVRDSVRFHLFKNGTCSCGDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST