Transcript Information: S_Transcript_30212.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value3E-132
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.316006732448
Replicate 222.53865364601
Replicate 320.467820830035
Condition 2: 8 Hour
Replicate 134.496954924774
Replicate 235.926556933208
Replicate 336.613102945027
Condition 3: 24 Hour
Replicate 122.744378693148
Replicate 224.97463158021
Replicate 323.738394734227


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_30212.p1 GENE.S_Transcript_30212~~S_Transcript_30212.p1 ORF type:3prime_partial len:510 (+),score=134.05,RRM_1|PF00076.18|0.038,RRM_1|PF00076.18|0.0027,RRM_1|PF00076.18|2.2e-17,RRM_1|PF00076.18|0.052,RRM_6|PF14259.2|8.1e-06,RRM_6|PF14259.2|0.0042,RRM_6|PF14259.2|1.2e+02,RRM_5|PF13893.2|0.011,RRM_5|PF13893.2|1.3,RRM_5|PF13893.2|0.00055,RRM_7|PF16367.1|1.7,RRM_7|PF16367.1|0.011 S_Transcript_30212:108-1634(+)
ATGTCTGATTACGATCGTGCTAAGTCCTCTCCTCGAAGAGGCTCGGATGATCGAAGCTCCCGTCATAAGCATAGGTCAAGGGATCTTGACCATGAGGTGTCAAGAGACTCAAGAACTAGAGAACGGGAGCATCACCGTGAGCAGGACTGGAGAAAGGATCGAGATCATCATCATAGGGATTACAGGGATAGAAATTCTAGGGATGATAGAAGAAGAGATTACGGAAGCCGTGACTATGACAGGTCACGTGATAGAGAAAGGAGGCACAGAGATAAATCACGCTCTCGTTCACCTTCCAATTCAAAAAGCAAGCGAACAAGTGGTTTTGACATGGCACCGCCAGCAGCTCCCTTGCTCCAAAATGCCCCAGCACCAGATCAACTTCCAGGGCTGCCTCAATCAATGCCAGGGCTATTGCAGAACATGTTCCCTGGAGGGCCAGCTCAGTTGGGGCCTCTCTCTTTGATGCCAGCACACACTATGACTCAACAGGCTACCAGGCATGCTCGTCGAGTCTATGTTGGTGGGCTTCCTCCTTCAGCCAATGAGCAGACAATTGCAACCTTCTTTAGCCAAGTTATGACTGCAGTTGGTGGAAACTCCGCTGGACCAGGAGATTCGGTTGTCAATGTGTATATCAATCATGAAAAGAAGTTTGCCTTTGTAGAAATGAGATCTGTTGAAGAAGCAAGTAATGCTATGGCATTGGATGGCATTTCATTTGAGGGGGTTTCTGTAAGGGTGAAGAGACCTACCGATTATAATCCTGCATTAGCTGCAGCTCTTGGTCCAAGCCTCCCAAGTCCTCACCTAAACCTGGCTGCTGTTGGCCTTGTGCCAGGAGCTGTTGCTGGGGCAGAGGGACCTGATCGTATATTTGTTGGGGGAATACCGTACTATTTCACTGAAGAGCAGATGAGAGAGTTGCTGGAATCATTTGGGCCGTTGAAAGGGTTTGACCTTGTCAAGGATAGGGACACTGGCAATTCAAAAGGCTATGGTTTTTGTGTTTACCAGGACCCAGCAGTGACTGATGTGGCCTGTGATGCACTTAATGGTTTGAAAATGGGAGATAAAACTTTAACTGTACGGAGAGCTGCTGTCAGCAATGGACAGGCAAAATTAGAGCATGAAAATCTCTTAGCACAGGCACAACAACATGTAGCCATGCAGAAAATGGCTCTACAAGCTGGTGGCTTCAATCTTCTTGGGGTCTCTTTGCCACCTCTGGCGAGCACAGAAAATCCAACCAAGATTCTTTGCTTGAATCAGGTGGTGACTATTGATGAATTGAGAGATGATAATGAGTATGATGAAATCTTGGAAGACATGAGGGATGAATGTGGAAAATTTGGAGTCCTGGTGAGTGTTATTATTCCTCGGCCAAACATGGAGGGGGATCTGATTCCTGGAGTTGGAAAGGTGTTTTTGGAGTATTCGGATTCTTCTGCGTGCGCTAATGCAAAGAGCATGCTTGGAGGAAGAAAGTTTGGAGGCAACACCGTAACTGCTGACTACTATCCAGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_30212.p1 GENE.S_Transcript_30212~~S_Transcript_30212.p1 ORF type:3prime_partial len:510 (+),score=134.05,RRM_1|PF00076.18|0.038,RRM_1|PF00076.18|0.0027,RRM_1|PF00076.18|2.2e-17,RRM_1|PF00076.18|0.052,RRM_6|PF14259.2|8.1e-06,RRM_6|PF14259.2|0.0042,RRM_6|PF14259.2|1.2e+02,RRM_5|PF13893.2|0.011,RRM_5|PF13893.2|1.3,RRM_5|PF13893.2|0.00055,RRM_7|PF16367.1|1.7,RRM_7|PF16367.1|0.011 S_Transcript_30212:108-1634(+)
MSDYDRAKSSPRRGSDDRSSRHKHRSRDLDHEVSRDSRTREREHHREQDWRKDRDHHHRDYRDRNSRDDRRRDYGSRDYDRSRDRERRHRDKSRSRSPSNSKSKRTSGFDMAPPAAPLLQNAPAPDQLPGLPQSMPGLLQNMFPGGPAQLGPLSLMPAHTMTQQATRHARRVYVGGLPPSANEQTIATFFSQVMTAVGGNSAGPGDSVVNVYINHEKKFAFVEMRSVEEASNAMALDGISFEGVSVRVKRPTDYNPALAAALGPSLPSPHLNLAAVGLVPGAVAGAEGPDRIFVGGIPYYFTEEQMRELLESFGPLKGFDLVKDRDTGNSKGYGFCVYQDPAVTDVACDALNGLKMGDKTLTVRRAAVSNGQAKLEHENLLAQAQQHVAMQKMALQAGGFNLLGVSLPPLASTENPTKILCLNQVVTIDELRDDNEYDEILEDMRDECGKFGVLVSVIIPRPNMEGDLIPGVGKVFLEYSDSSACANAKSMLGGRKFGGNTVTADYYPE

Click here to download the sequence:
Link to NCBI Protein BLAST