Transcript Information: S_Transcript_303479.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeHomolog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value8E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.8330678847085
Replicate 27.3045722183664
Replicate 38.9721418785084
Condition 2: 8 Hour
Replicate 12.8818095023153
Replicate 22.720900510237
Replicate 34.1767539225977
Condition 3: 24 Hour
Replicate 19.4464361040407
Replicate 26.4316222040986
Replicate 36.4759303202325


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_303479.p1 GENE.S_Transcript_303479~~S_Transcript_303479.p1 ORF type:internal len:148 (+),score=46.45,ATG16|PF08614.7|1e-06 S_Transcript_303479:1-441(+)
CTAAGAATGAGAGTAGAGTGTGCAGCTAAGACAGAAGTTGGATTGAATCAACAAATTGAAGAACTGAAAAAAGAGAGAGATGATGCAAAAGAAGATGCCATGAAAAGGGCTAAAGATGGAGCTCAAAGTGTTGAAAACTTTAGAACCCAGGTTGAGCAGTTGCAGAGCGAGAAACAGAGCCTCGAGCTTGAATTGGGAACCGTGAAGCAAAAAGTTTTTGCTCCAGAAGAGGAATTGTCCTCGGCAAAAGAGGAATCAGAGATCATGAGTAAGTCTATGGAAGCTGCTAAACAGGAAAATATTACTCTCTCTCAGAAAATTTCAGAGGTGACTGATGAAGTTAAGCGTGCACAGAACACCATAGATGAGCTGACAACAGAATCTGGCAGTTCCAAAGAAAGATTGGTTCAGAGGGAAAAAGACTTCTCATCCCTACAGGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_303479.p1 GENE.S_Transcript_303479~~S_Transcript_303479.p1 ORF type:internal len:148 (+),score=46.45,ATG16|PF08614.7|1e-06 S_Transcript_303479:1-441(+)
LRMRVECAAKTEVGLNQQIEELKKERDDAKEDAMKRAKDGAQSVENFRTQVEQLQSEKQSLELELGTVKQKVFAPEEELSSAKEESEIMSKSMEAAKQENITLSQKISEVTDEVKRAQNTIDELTTESGSSKERLVQREKDFSSLQE

Click here to download the sequence:
Link to NCBI Protein BLAST