Transcript Information: S_Transcript_304545.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.13268155455828
Condition 2: 8 Hour
Replicate 10.10228004948265
Replicate 21.0729903424329
Replicate 31.07345995133
Condition 3: 24 Hour
Replicate 10
Replicate 20.054349668048795
Replicate 30.12096903791423


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_304545.p1 GENE.S_Transcript_304545~~S_Transcript_304545.p1 ORF type:complete len:417 (+),score=92.79,UBN2_3|PF14244.2|6.2e-44,Retrotrans_gag|PF03732.13|7.9e-10,Retrotrans_gag|PF03732.13|1.2e+03 S_Transcript_304545:636-1886(+)
ATGGCTGCCTCTTCATCTACAAGTTCATCACCTACTGTCATTGATGCTTCAAACCCATTGTATTTGCACCCTAGTGATCACCCTGGTATGCTTTTGACTGTTTCTCCTTTTGATGGAAATGGTTTCAATTCATGGAAAAGAGGTATGTTAATTGCCCTCTCTGCTAAGAATAAGCTTGGCCTAGTTAATGGCTCAATTGTCAAACCTGCTATTGATTCTGATATTTTACCTACCTGGGAAAGATGTAACAACATGGTGATTTCTTGGCTCTTAAATGCTTTAAATAGAGATATTGCTGACAGTGTCTTGTATTGTGACACTGCTGAGGACATTTGGAAGGAGTTAAATGAAAGATTTGGACAGTCTAATGGACCTCAACTGTATAGATTGCAAAAGGACATCAATGACATTTCTCAAGGTAGCACTGATGTACCAGTATATTACACTAAGATGAAAAAATTGTGGGATGAATTGAACTCAGTTGATGCTTTACCTACTTGCACATGTGGGGCTGTACAAGAGATAAATAGGAGAGAACAAGAAAGAAGATTAATTCAGTTTTTGATGGGATTGAATGATGATTACTCAACTGCAAGAGGGAACATCTTAATGATGAAACCTCTTCCTAGTGTCTCTACAGCTTATTCTTTACTGATGCAGGATGAGAAACAAAGGGAGATTAAACCAAACAATCAACATTTTGTAAATGAGGCCTCATCTTTTCATGTTGGAAATCACAGGAACTATAATAGGAATGATTCAAGGGGAAATAACAATCCAAGATTTGATCCTAGATTTGATTCAAGAAAAGACAACAGGAGAACTCCTACTTTCTGTACATATTGTAAGAGGCAAGGACACTCTGAAGATAAATGTTGGAAGAAACATGGTTATCCTCAGCATATTCAACAAAATTCATACAGGCAGGAAAGCTTTAAAGGAAAAAGAATGGCTCATCTTGCACAATCTGATTTTGATGATTCAGCACAGACTGGGGAACAACACAACAAATCTGCTATTGATCATGATCTTGGGAGCTCCTCTACATCTGGTAATCTCAATTCTGATCAATGTCAACAACTCATTCAATTTCTCACCCAGCAAATGACAAAAGGGACTTCAATTTCTCAGCCTTCCTCTGGTAATCCATCCTTTGCCAACTTTGCAGATTTAGAAAGGCTTTGGAGACAATGTTCCCCGTGGTCGCCAAGGACTCCAGGGCTGTGGAGTGACCGTGGACAAGCTCCGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_304545.p1 GENE.S_Transcript_304545~~S_Transcript_304545.p1 ORF type:complete len:417 (+),score=92.79,UBN2_3|PF14244.2|6.2e-44,Retrotrans_gag|PF03732.13|7.9e-10,Retrotrans_gag|PF03732.13|1.2e+03 S_Transcript_304545:636-1886(+)
MAASSSTSSSPTVIDASNPLYLHPSDHPGMLLTVSPFDGNGFNSWKRGMLIALSAKNKLGLVNGSIVKPAIDSDILPTWERCNNMVISWLLNALNRDIADSVLYCDTAEDIWKELNERFGQSNGPQLYRLQKDINDISQGSTDVPVYYTKMKKLWDELNSVDALPTCTCGAVQEINRREQERRLIQFLMGLNDDYSTARGNILMMKPLPSVSTAYSLLMQDEKQREIKPNNQHFVNEASSFHVGNHRNYNRNDSRGNNNPRFDPRFDSRKDNRRTPTFCTYCKRQGHSEDKCWKKHGYPQHIQQNSYRQESFKGKRMAHLAQSDFDDSAQTGEQHNKSAIDHDLGSSSTSGNLNSDQCQQLIQFLTQQMTKGTSISQPSSGNPSFANFADLERLWRQCSPWSPRTPGLWSDRGQAP*

Click here to download the sequence:
Link to NCBI Protein BLAST