Transcript Information: S_Transcript_304640.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0645200494072
Replicate 20.77219763451302
Replicate 30.78381628355302
Condition 2: 8 Hour
Replicate 12.3991064106775
Replicate 21.7338182695788
Replicate 32.2914536175355
Condition 3: 24 Hour
Replicate 10.60073429599134
Replicate 20.79323340517216
Replicate 31.198047109243


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_304640.p1 GENE.S_Transcript_304640~~S_Transcript_304640.p1 ORF type:complete len:400 (+),score=81.23,UBN2_3|PF14244.2|1.3e-35,Retrotrans_gag|PF03732.13|4.9e-08 S_Transcript_304640:1046-2245(+)
ATGGCTGAAGGTCAACCTAAACCTCTTGAACCTACTGATCCTTTGTACCTTCATCCATCTGATGGACCCAACTCACTGAAAGTAGAACCAGTCCTTACTGGACCTGGAAATTTTAGACCATGGAAAAGACAAATGGAAATAGCTCTAGCTACAAAGAGGAAGCTAGGCTTTGTGACTGGTGTTGTGACCAGACCCTCCACTATCACTACCAAGCAAGAGGCTTGGGATACAAGTAACAGCATTGTGATAGCATGGATATTGAACAATGTTAATGAGTCCATTAGGAGGTCTGTAATGTATATGGAGACTGCTAGGAGCATCTGGAGTAATCTGTGCACTAGATTCACTGTGAATAATGGTTCAAGGAAGTATAAATTGAATAGGGATACTTATGAGATCAGGCAGAATAATAGACCTATCTCAGAGTATTATATTGAACTTCAAGTTGTCTGGGAAGAACTGGAGTCTTTGAGTGATTATCCCCCAATACTGAATGTCACTACTGAAGTCTTAGCTTTTATGAAGGCTATAAATAACCAAAAGGAGGAACTCAGACTATTTCAATTCTTAAATGGGCTTGATTTCAAATATGGTGTCATGAGAAGCAACATACTCATAATGGATCCTCTTCCTGGTGTGGAAGCCACAGTAAGCATGCTACAGCAAGAGGAAGGGCAGGATGAGATGTTGGTTGATGTGAAGGAGGAAGGAAGTACTTCTGCATTTTACAGTAAGGGAGAAAACTCTCAAATGTTAATCTGCACTGCATGTGGTATGAAAGGTCATACCAAAGAAAAATGTTGGGCCATCATAGGTTATCCTCCTTGGCATCCTAAGGCTAAGAAGGGTAATCCTAACTTTAGAGGTCAGACAGGTGGACCTGCTAAGCCTTTCATTGCCCCGCAAGGAAAAGGGAAACCTTATCAGAAACTCAACTCTCCAGGACCTAAGAGGATGGCTGCCAATGCTCAGAAGCATAGTGATGAACTCAATGCTGCAATAGCTATGTTGGGAAATCTAATGAAGCTAACTACTCCTAGCAGCTCTAGTCAGAAAGCTGGAACAGATACAAATGAGGAGTTGGATACTCAGTTTGCAGGTATGGTTGTATGCTTTAATACTCAATATAAATCAAATGAATGGATTATAGATTCTAGAGCTTTAGATCACATGAAAGGGAGTCTGGACTGTGTAATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_304640.p1 GENE.S_Transcript_304640~~S_Transcript_304640.p1 ORF type:complete len:400 (+),score=81.23,UBN2_3|PF14244.2|1.3e-35,Retrotrans_gag|PF03732.13|4.9e-08 S_Transcript_304640:1046-2245(+)
MAEGQPKPLEPTDPLYLHPSDGPNSLKVEPVLTGPGNFRPWKRQMEIALATKRKLGFVTGVVTRPSTITTKQEAWDTSNSIVIAWILNNVNESIRRSVMYMETARSIWSNLCTRFTVNNGSRKYKLNRDTYEIRQNNRPISEYYIELQVVWEELESLSDYPPILNVTTEVLAFMKAINNQKEELRLFQFLNGLDFKYGVMRSNILIMDPLPGVEATVSMLQQEEGQDEMLVDVKEEGSTSAFYSKGENSQMLICTACGMKGHTKEKCWAIIGYPPWHPKAKKGNPNFRGQTGGPAKPFIAPQGKGKPYQKLNSPGPKRMAANAQKHSDELNAAIAMLGNLMKLTTPSSSSQKAGTDTNEELDTQFAGMVVCFNTQYKSNEWIIDSRALDHMKGSLDCVM*

Click here to download the sequence:
Link to NCBI Protein BLAST