Transcript Information: S_Transcript_30531.p1


Annotated TAIR IDAT3G06770.2
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2135119-2137033 | Reverse length=446
E-Value5.7E-195
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.694908994481
Replicate 225.594771219135
Replicate 330.818782666017
Condition 2: 8 Hour
Replicate 122.541311694864
Replicate 223.843680787077
Replicate 323.09216823873
Condition 3: 24 Hour
Replicate 118.635218591757
Replicate 219.333821717542
Replicate 323.618010879352


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_30531.p1 GENE.S_Transcript_30531~~S_Transcript_30531.p1 ORF type:complete len:456 (+),score=52.09,Glyco_hydro_28|PF00295.13|4e-27,Pectate_lyase_3|PF12708.3|4.5e-15,Pectate_lyase_3|PF12708.3|2.8e+02 S_Transcript_30531:1163-2530(+)
ATGCTAGTGGCATTGCTTCTGCTTTTTTCATTGGGCAATGCTATTGAAGTCCTTGCTGAAGACAGTGATGAGCAATGTAGATACAAACCAAAATTGGACCCAAGACCTCATAGTGTATCTATATTGGAGTTTGGTGCTGTTGGGGATGGGAAAACAGTGAACACTGGTGCCTTTCAAAATGCCATTTTCTATCTCAATTCATTTGCAGACAAGGGTGGCGCCCAATTGTATGTGCCGCCAGGGAAGTGGCTCACTGGTAGCTTCAACCTTACTAGCCATCTCACCCTTTTCCTCGAAAAGGATGCTATTATCCTCGGATCTCAGGATCCATCGCATTGGGGAATAGTTGATCCATTGCCATCATATGGTCGCGGAACTGAGCTTCCTGGTAGTAGATATCGGAGCTTGATAAATGGATATAATTTGCACGATGTGGTAATAACAGGTAATGATGGAACTATTGATGGGCAAGGGTCGTTCTGGTGGGATGGTTTTCTCTCGCATACCCTGAACTACAGCCGCCCTCATCTTGTGGAATTTGTAGAGTCAAATGGTGTTGTAGTTTCAAACTTGACTTTTTTGAATGCGCCTGCATATAACATCCATCCCGTCTATTGCAGCCATGTACTAGTGCAAAACATTTCAGTTCGTGCTCCACCCTCATCTCCTTACACAGTTGGTATAGTCCCAGATTCAACGAATCACATATGCATTGAGAGCTGCAACATAAGCACAGGTTTTGATGCCATTGCGCTAAAAAGTGGCTGGGACGAGCATGGCATTGCCTACGGTAGGCCCACGTCCTACGTTCATATCAGAGAGGTGAAGCTTCAGGCGTCAGCTGGCTCTGCCGTGGCATTTGGAAGCCAGATGTCGGGTGGCATTTCTCATGTGCTAGCCGAGAACTTCCACATAAACAACTCCCTCATCGGCATTGACTTCAGAACCGCCCCAGGCAGGGGCGGCTACATTGAGGACATAACCATATCAAATGTGGGGATAGAGAATGTCCAAACCGCATTCAATGCTAGTGGTCAATGGACATCTCATCCAGACGATAAATATGACCCCAGTGCACTCCCAGTTCTAAAATGGATCACATTGGATAATGTCATCGGAATGAATGTAACCGTAGCTGGTAGCTTCACTGGCATCGAAAACTCCCCCTTTGAATTCTCACTATCAAACATCTCAATCTCTCTCAATTCAGCATCCTCCACCACCTGGGTATGTTCTAATGTTTTAGGGTCCTCGAAAAATGTCTCTCCTGAGCCTTGCCCTGAGTTTGAGACCTCCCTTTCAAAATCTTCCTCTATATCTACCACTATTGGCCTAGGTTCCAAAGGTGGTTTGGTCACAGATTTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_30531.p1 GENE.S_Transcript_30531~~S_Transcript_30531.p1 ORF type:complete len:456 (+),score=52.09,Glyco_hydro_28|PF00295.13|4e-27,Pectate_lyase_3|PF12708.3|4.5e-15,Pectate_lyase_3|PF12708.3|2.8e+02 S_Transcript_30531:1163-2530(+)
MLVALLLLFSLGNAIEVLAEDSDEQCRYKPKLDPRPHSVSILEFGAVGDGKTVNTGAFQNAIFYLNSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKDAIILGSQDPSHWGIVDPLPSYGRGTELPGSRYRSLINGYNLHDVVITGNDGTIDGQGSFWWDGFLSHTLNYSRPHLVEFVESNGVVVSNLTFLNAPAYNIHPVYCSHVLVQNISVRAPPSSPYTVGIVPDSTNHICIESCNISTGFDAIALKSGWDEHGIAYGRPTSYVHIREVKLQASAGSAVAFGSQMSGGISHVLAENFHINNSLIGIDFRTAPGRGGYIEDITISNVGIENVQTAFNASGQWTSHPDDKYDPSALPVLKWITLDNVIGMNVTVAGSFTGIENSPFEFSLSNISISLNSASSTTWVCSNVLGSSKNVSPEPCPEFETSLSKSSSISTTIGLGSKGGLVTDL*

Click here to download the sequence:
Link to NCBI Protein BLAST