Transcript Information: S_Transcript_305578.p2


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.40527413048498
Replicate 20.67196313373142
Replicate 30.46808974831473
Condition 2: 8 Hour
Replicate 10.75775498588797
Replicate 20.34068805035117
Replicate 30.64921363263903
Condition 3: 24 Hour
Replicate 11.3306528014575
Replicate 21.0354025593255
Replicate 30.38409204677842


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_305578.p2 GENE.S_Transcript_305578~~S_Transcript_305578.p2 ORF type:complete len:197 (+),score=23.27,UBN2_3|PF14244.2|5.1e-16,UBN2|PF14223.2|5.9e-13,UBN2_2|PF14227.2|3.5e+03,UBN2_2|PF14227.2|3.3e-08,Retrotrans_gag|PF03732.13|1.1e+03,Retrotrans_gag|PF03732.13|3.6e-06 S_Transcript_305578:1372-1962(+)
ATGGCTTCCAAAACACATCCAGCTTTTTCTGTTTCCAACATCAAAACATTCATCCCTCTTGTGTTGGACCTCTCCGACACTGATTATGAAACCTGGAAAGAACTATTTGAGACTCATGCTACAAGTTTCGATGTTCTGGGACATCTTGACGGCACGGCGAAACCCACTGATGACACCAAAGCCGAATGGACGCGACTCGATTCATTGGTCAAGTCTTGGATTTATGGTACTATTGCTCCAACTCTCTTCCGAATGGTGGTCGTCGGCAAAAGGCCTACTGCTCATACTATTTGGACTAATGTTCAAAACATATTTCGTGATAACAAGGAATCACGATCAGTATGCTTGAAGCATGAATTTCGCACTCTTGCACTCGGTGATTTGTCTGTTGCCGCCTACTGTCATCGCCTTAAGACGTTGGCTGATCTCCTTGCCGGCGTCGATTCCCCCGTCTCTGACAAAACTCTTGTCATTCAGATGATAAATGGTCTCCCTCATAAGTACGGCAATGTCATCAATGCTATTCGTTACAAAACTCCTTTTCCCTCCTTCATGGAGGCTCGCTCTATGTTAACTCTTGAAGAAGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_305578.p2 GENE.S_Transcript_305578~~S_Transcript_305578.p2 ORF type:complete len:197 (+),score=23.27,UBN2_3|PF14244.2|5.1e-16,UBN2|PF14223.2|5.9e-13,UBN2_2|PF14227.2|3.5e+03,UBN2_2|PF14227.2|3.3e-08,Retrotrans_gag|PF03732.13|1.1e+03,Retrotrans_gag|PF03732.13|3.6e-06 S_Transcript_305578:1372-1962(+)
MASKTHPAFSVSNIKTFIPLVLDLSDTDYETWKELFETHATSFDVLGHLDGTAKPTDDTKAEWTRLDSLVKSWIYGTIAPTLFRMVVVGKRPTAHTIWTNVQNIFRDNKESRSVCLKHEFRTLALGDLSVAAYCHRLKTLADLLAGVDSPVSDKTLVIQMINGLPHKYGNVINAIRYKTPFPSFMEARSMLTLEED*

Click here to download the sequence:
Link to NCBI Protein BLAST