Transcript Information: S_Transcript_305643.p1


Annotated TAIR IDAT5G52290.1
Annotated Gene Nameshortage in chiasmata 1
Annotated Gene Symbol(s)SHOC1
Annotation TypeHomolog
Chromosome Positionchr5:21230353-21236554 | Reverse length=1594
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.12632011016165
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_305643.p1 GENE.S_Transcript_305643~~S_Transcript_305643.p1 ORF type:5prime_partial len:146 (+),score=19.68 S_Transcript_305643:2-439(+)
AAAACCTCTGGCGATCAGCAGCTGGATTTCTTCTCGTTTCTCTCTCAAAATCCTATCTCTTTCTCATCTCTACTCTCATCACTGAAGAATCTGAAAATGCGAACTCGGTTTCTCACACCCGATTACTTCAATACCAACCAAACCCTAACATTCCTTCGATTTCCTCTCCCCTCTCTTCAATCTCCTCTCTATCATCTCTTTATCTCCTCAAACTTCAATCACGAGCTTCTTCGGTGTCTAGATTCTTCTTCCGCCATTTCTGAATCTCTCGAACTCCAGAGCTTCCCTATCAACAATGTTATTTCCAAGTTCTTCTCCAACGTCGTTCCTCATACTACTGATGCTCCAAACGTCGATTCTCCTGCTGTCTTCAACAACAAATTCCCTGAGGTATACACATTTCGTAATTTGGAACCTTCTATCTCTCTTTTAGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_305643.p1 GENE.S_Transcript_305643~~S_Transcript_305643.p1 ORF type:5prime_partial len:146 (+),score=19.68 S_Transcript_305643:2-439(+)
KTSGDQQLDFFSFLSQNPISFSSLLSSLKNLKMRTRFLTPDYFNTNQTLTFLRFPLPSLQSPLYHLFISSNFNHELLRCLDSSSAISESLELQSFPINNVISKFFSNVVPHTTDAPNVDSPAVFNNKFPEVYTFRNLEPSISLLG*

Click here to download the sequence:
Link to NCBI Protein BLAST