Transcript Information: S_Transcript_305660.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value7E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.092890056667297
Replicate 20
Replicate 30.03218627588761
Condition 2: 8 Hour
Replicate 10
Replicate 20.15617346345359
Replicate 30.074400864240773
Condition 3: 24 Hour
Replicate 10.076247411834535
Replicate 20.079105799568403
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_305660.p1 GENE.S_Transcript_305660~~S_Transcript_305660.p1 ORF type:5prime_partial len:573 (-),score=107.15,UBN2|PF14223.2|3.6e-35,UBN2|PF14223.2|5e+03,UBN2|PF14223.2|1.2e+03,UBN2_2|PF14227.2|5.7e-16,UBN2_2|PF14227.2|1.6e+03,UBN2_2|PF14227.2|1.8e+03,zf-CCHC|PF00098.19|0.00072,zf-CCHC|PF00098.19|0.0029 S_Transcript_305660:35-1753(-)
ATTACATACAAGGACGACAAAGGGAAGGAAGTTCCCACTCCTCCCTCCTTGTATGATGAGAACGATTTCCGGAAGTTGGAAAAGAATGCTAGGGCAATGAAGCTCCTATATTATGCTCTTGGACCAGATGAGTACAACCGCATTGCTAGTTGTAGCACTGCCAAGGAAATCTGGGATATGCTTCAAGTGACCCATGAAGGAACCTCTCAAGTGAAGCAATCACGCATAGAACTTCTCATGAGGGACTATGAGCTTTTCATTATGGCAAAAGATGAATCAATCAAGGAAATGAACACAAGACTCACCAACATAGTGAATGAGCTTAGGTCTCTAGGCAAGAATCTCTCCACCGAAGAGCTTGTGAGGAAAGTTCTAAGGGTCTTGCCGGGCATTTGGCAACCCAAAGTGACGGCCATAAACGAAGCAAAGGACTTGAGTAAGCTCGCTCTTGAAGACCTAATTGGGAACTTGGAAACGCATGAACTAACTCTCAATTTGCTATCCAAGGCTTCCATGAGTAAAGATAAGGGCATTGCTCTAAAAGTTGCTCAAAGTGATGAAGATTATTCAGACTTTGAAGAAGAGGAAATTGCCATGCTTGTGACAAGATTTAGAAAATACATCAAGCTCAATAAAGGTTACAACAAGAAAGGTGGCTCGAGCAAAGGAAAGAATGTCCCAAAGAACAATTCTGAAGGATGTTTTAAGTGTGGTAAACATGATCACCGAATCAAAGAATGCCCACTGTGGGAAGAAGAAAATCAGCGGAACCGGGTTCCGCCCGTCCAGAATCAGAAGCACAAAAAGGCCTTCAAACGGGAATTCAAGAAAGCTATGATGGCTGCGGCATGGGGAGATTCAGATAATGAAGACTCGGATGATCATGCTGATGAAGCCAACCTATGTCTCATGGCATTGAGCGACTCGGATTCCGAGGAAGAAAGCCTCCAAGTAAGTATGGAAAAGTTTATTTCTAAAGCTCACAAACTTAGCAAAAGTAGATTGGTTGAATTATTGAATGTCTTGTTTGATGATTATATGAATATCTCTGCTGAAAAAGACATGTTCAATGATGCTTTTGGTAGCCTAAAAATAGACTTTAAGGAATTAAACACTCAGAAAACTTCACTTGAATGCATTAATCAAGATCTACTTGCTAGAATTGCTGAAATGGAGGAAACAGGTTCTGAAACAGAGAAAACCATGTCTGCCTTGTCTCGAGAACTTGAGTCCATTAAATCCTCTAACTCTAGTTACAAATCCTTGACTAATGATGACTTAGAGTATTCAGGAATTAGTGACTTGGAGCTAATTGATGTGAAGTCGAAACTTGAAACTAAAATTGTAGAATGCAACCAGCTTCAACACAAACTTGATAAAACTCTTAAGGAACTTTGCAAACATAAGAAATGGGAACAATCTTCTAAAGCTTTAATTTGGCTAAATGAAAATCACAGCAAGTTTAGACAAGGTTTAGGATATAAGAAGGAAAGAACTCCTTGGAATCCAAGGAGTAAGTATGTTGACCTACCTTGCAATAGACTTTGTTTTCATTGTGGAAAGAATGGCCACTACCGTAGAGAATGCTTGGCTAGGTTCAAAGCTTATGAGAAGAATGGTTTGCATGTGAAACAAATTTGGGTAGTTAAGAATACACTATTTCATGGCACTAGAGAACCGGGACCCAAACAAGTTTGGGTTCCCAAATCTAACCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_305660.p1 GENE.S_Transcript_305660~~S_Transcript_305660.p1 ORF type:5prime_partial len:573 (-),score=107.15,UBN2|PF14223.2|3.6e-35,UBN2|PF14223.2|5e+03,UBN2|PF14223.2|1.2e+03,UBN2_2|PF14227.2|5.7e-16,UBN2_2|PF14227.2|1.6e+03,UBN2_2|PF14227.2|1.8e+03,zf-CCHC|PF00098.19|0.00072,zf-CCHC|PF00098.19|0.0029 S_Transcript_305660:35-1753(-)
ITYKDDKGKEVPTPPSLYDENDFRKLEKNARAMKLLYYALGPDEYNRIASCSTAKEIWDMLQVTHEGTSQVKQSRIELLMRDYELFIMAKDESIKEMNTRLTNIVNELRSLGKNLSTEELVRKVLRVLPGIWQPKVTAINEAKDLSKLALEDLIGNLETHELTLNLLSKASMSKDKGIALKVAQSDEDYSDFEEEEIAMLVTRFRKYIKLNKGYNKKGGSSKGKNVPKNNSEGCFKCGKHDHRIKECPLWEEENQRNRVPPVQNQKHKKAFKREFKKAMMAAAWGDSDNEDSDDHADEANLCLMALSDSDSEEESLQVSMEKFISKAHKLSKSRLVELLNVLFDDYMNISAEKDMFNDAFGSLKIDFKELNTQKTSLECINQDLLARIAEMEETGSETEKTMSALSRELESIKSSNSSYKSLTNDDLEYSGISDLELIDVKSKLETKIVECNQLQHKLDKTLKELCKHKKWEQSSKALIWLNENHSKFRQGLGYKKERTPWNPRSKYVDLPCNRLCFHCGKNGHYRRECLARFKAYEKNGLHVKQIWVVKNTLFHGTREPGPKQVWVPKSNP*

Click here to download the sequence:
Link to NCBI Protein BLAST