Transcript Information: S_Transcript_307134.p4


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9500906077503
Replicate 21.9970628478785
Replicate 30.5564618645914
Condition 2: 8 Hour
Replicate 17.8131817972255
Replicate 25.6893925419994
Replicate 37.0746563171705
Condition 3: 24 Hour
Replicate 11.5065436890065
Replicate 21.4653326450225
Replicate 32.3917455901403


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_307134.p4 GENE.S_Transcript_307134~~S_Transcript_307134.p4 ORF type:complete len:232 (+),score=50.93,UBN2_3|PF14244.2|1.3e-42,Retrotrans_gag|PF03732.13|3e-08 S_Transcript_307134:3891-4586(+)
ATGAGTTCAGAATCTGTAGGCACAAGTACACTTACTATTGATGTACATGATGAGTTATACATTCATCATGGAGATGTTTCTAGTTCTTTCATGCTGGCTACACAAAAACTTACTGGTGATAATTTTGGTGAATGGAAGAGATCAGCAGAGATTTCTTTGAGTGCTAAGAACAAACTAGGCCTTGTCCTTGGCACATGTGCTCAACCTGCTGCTGGTTCTGCTACACTAAGTCATTGGCAACGATGTAACAACCTGGTAATATCTTGGATCTTACATTCTGTTTCTCCTGAAATAGCTAGAAGCATCTTGTATTACAACACTGCTGCTGAAATCTGGACTGAACTTCAAGATCGTTATGGTCAGTCAAATGCTACTAGGAAGTTTCAGGTTCACAAACATATAAATGAAATTTCTCAAGGCAATTTGTCTGTCACTGAATATTACAAAGCTTTGAAAACCTCCTGGGATGAGTACTTGTCTTTACTCACTTTACCTGCTTGTACATGTGGGAGTAGCACTGCCTTTCTTGACATTCTGCAAGAACAACAAACTCTACAGTTTCTCCTTGGTCTTAATGATGATTTTGTTCATGTTCGAGGCAATGTTTTGATGATGAAACCTCTACCTAATCTCAGCCAAGCATATAGATATGTGTATCAGGAAGAAAAAACAAAGGGAATGTGGTGTGTCAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_307134.p4 GENE.S_Transcript_307134~~S_Transcript_307134.p4 ORF type:complete len:232 (+),score=50.93,UBN2_3|PF14244.2|1.3e-42,Retrotrans_gag|PF03732.13|3e-08 S_Transcript_307134:3891-4586(+)
MSSESVGTSTLTIDVHDELYIHHGDVSSSFMLATQKLTGDNFGEWKRSAEISLSAKNKLGLVLGTCAQPAAGSATLSHWQRCNNLVISWILHSVSPEIARSILYYNTAAEIWTELQDRYGQSNATRKFQVHKHINEISQGNLSVTEYYKALKTSWDEYLSLLTLPACTCGSSTAFLDILQEQQTLQFLLGLNDDFVHVRGNVLMMKPLPNLSQAYRYVYQEEKTKGMWCVS*

Click here to download the sequence:
Link to NCBI Protein BLAST