Transcript Information: S_Transcript_307141.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.65415279011499
Replicate 30.84508494183615
Condition 2: 8 Hour
Replicate 10.34488501860592
Replicate 20.78391922457263
Replicate 31.3214676412792
Condition 3: 24 Hour
Replicate 11.5897893645446
Replicate 21.4050341408517
Replicate 30.81580736620322


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_307141.p2 GENE.S_Transcript_307141~~S_Transcript_307141.p2 ORF type:5prime_partial len:371 (+),score=70.75,UBN2_3|PF14244.2|1.5e-43,Retrotrans_gag|PF03732.13|3.1e-09,GILT|PF03227.12|2.4e-06 S_Transcript_307141:2-1114(+)
ACCACCATTCTTTGCCAGCATGGTCCATCTGAATGCCTTCTGAACACAATTGAAGCCTGTGCAATAGATGCATGGCCAAGCCTGAAATTGAATGGAGACAATTTTTCTGAATGGAAGCGTTCTGCAGAGATTGCCTTAAGCGCTAAAAACAAGTTAGGATTCGTTCAAGGTACATGTGCTAAACCTGAACCTAACTCTCCTCTTTTACCTCATTGGGAGAGATGCAATAATCTTGTGATTACTTGGATTCTACACTCTGTTGATTCTGAAATTGGAAGAAGTATATTGTATTATCACACTGCATCAGAAATTTGGAATGAACTTGTTGATCGATATGGACAGTCTAATGCACCTAGGAAGTATCAGGTTCATAAGCATATCAGTGAGATTGGGCAAGGAAGTAGCACTGTAACTGATTATTACACTGCTTTGAAAACATCCTGGGATGAGTATCTGTCCTTAATTACCCTGCCAGCTTGTACTTGTGGTGCTGGAAATGCATTCTTAGGAATTTTGCTTGAGCAGCAAGTACTTCAATTCCTTTTAGGACTTAATGATGATTACATACATACTCGAGGTAATCTGTTGATGATGCAACCATTACCAAATCTCAGTCAAGCATACAGATATGTTTTTCAAGAAGAAAAACAAAGACAGTGTGGTGCTTCTGTCTCTCTTGGTTCTGATTCCACAGCTCTTGCAGCACAGAAAGGACCTTATGTTGGAAATCAAAAATTTGGTAACAAATGGTCTAGGCATACCAATAATAGTCCAGGCAATGACTATCAGTCTTCTATTTCAATGCAATCATATCCTAACACTTTTTCCGGACCTTCACAACATGCTCAGAGGCCAGTGTATGGTATAAGTCCTAATGGAAGGAGATCTAAATATTTTTGTGATCATTGTAAGGTGTTTGGACACAGTATTGATAGATGCTACAAAGTCCATGGTTATCCTCCTGACAAAGGGAAGAAGATAGCCAATTATGCTCAGCATGATCCTGTGATTGATATTTCTGGTGGTTCTGTTTCTTCTCCTGCTGTTGATGGATCTTCTTCACATAATCTGACCTCTGATCAGATTCAACACCTCATTTCTCTGGTGTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_307141.p2 GENE.S_Transcript_307141~~S_Transcript_307141.p2 ORF type:5prime_partial len:371 (+),score=70.75,UBN2_3|PF14244.2|1.5e-43,Retrotrans_gag|PF03732.13|3.1e-09,GILT|PF03227.12|2.4e-06 S_Transcript_307141:2-1114(+)
TTILCQHGPSECLLNTIEACAIDAWPSLKLNGDNFSEWKRSAEIALSAKNKLGFVQGTCAKPEPNSPLLPHWERCNNLVITWILHSVDSEIGRSILYYHTASEIWNELVDRYGQSNAPRKYQVHKHISEIGQGSSTVTDYYTALKTSWDEYLSLITLPACTCGAGNAFLGILLEQQVLQFLLGLNDDYIHTRGNLLMMQPLPNLSQAYRYVFQEEKQRQCGASVSLGSDSTALAAQKGPYVGNQKFGNKWSRHTNNSPGNDYQSSISMQSYPNTFSGPSQHAQRPVYGISPNGRRSKYFCDHCKVFGHSIDRCYKVHGYPPDKGKKIANYAQHDPVIDISGGSVSSPAVDGSSSHNLTSDQIQHLISLVS*

Click here to download the sequence:
Link to NCBI Protein BLAST