Transcript Information: S_Transcript_307142.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9661320173748
Replicate 22.6778055927327
Replicate 33.7469411040561
Condition 2: 8 Hour
Replicate 12.47577090753
Replicate 21.829887355756
Replicate 31.4623008911069
Condition 3: 24 Hour
Replicate 12.5360814606495
Replicate 22.7507528562321
Replicate 32.8616039826385


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_307142.p2 GENE.S_Transcript_307142~~S_Transcript_307142.p2 ORF type:complete len:379 (+),score=76.45,UBN2_3|PF14244.2|1.5e-44,Retrotrans_gag|PF03732.13|3.2e-09 S_Transcript_307142:724-1860(+)
ATGGCTGCTGAATCAGATACTGCTTCTCCGAATGTTGTGATTGATATTCACAATGAGCTGTATATTCATCATGGAGAAGTCTCAAGCAATTTCATGCTTGCTACACAGAAATTGAATGGAGACAATTTTTCTGAATGGAAGCGTTCTGCAGAGATTGCCTTAAGCGCTAAAAACAAGTTAGGATTCGTTCAAGGTACATGTGCTAAACCTGAACCTAACTCTCCTCTTTTACCTCATTGGGAGAGATGCAATAATCTTGTGATTACTTGGATTCTACACTCTGTTGATTCTGAAATTGGAAGAAGTATATTGTATTATCACACTGCATCAGAAATTTGGAATGAACTTGTTGATCGATATGGACAGTCTAATGCACCTAGGAAGTATCAGGTTCATAAGCATATCAGTGAGATTGGGCAAGGAAGTAGCACTGTAACTGATTATTACACTGCTTTGAAAACATCCTGGGATGAGTATCTGTCCTTAATTACCCTGCCAGCTTGTACTTGTGGTGCTGGAAATGCATTCTTAGGAATTTTGCTTGAGCAGCAAGTACTTCAATTCCTTTTAGGACTTAATGATGATTACATACATACTCGAGGTAATCTGTTGATGATGCAACCATTACCAAATCTCAGTCAAGCATACAGATATGTTTTTCAAGAAGAAAAACAAAGACAGTGTGGTGCTTCTGTCTCTCTTGGTTCTGATTCCACAGCTCTTGCAGCACAGAAAGGACCTTATGTTGGAAATCAAAAATTTGGTAACAAATGGTCTAGGCATACCAATAATAGTCCAGGCAATGACTATCAGTCTTCTATTTCAATGCAATCATATCCTAACACTTTTTCCGGACCTTCACAACATGCTCAGAGGCCAGTGTATGGTATAAGTCCTAATGGAAGGAGATCTAAATATTTTTGTGATCATTGTAAGGTGTTTGGACACAGTATTGATAGATGCTACAAAGTCCATGGTTATCCTCCTGACAAAGGGAAGAAGATAGCCAATTATGCTCAGCATGATCCTGTGATTGATATTTCTGGTGGTTCTGTTTCTTCTCCTGCTGTTGATGGATCTTCTTCACATAATCTGACCTCTGATCAGATTCAACACCTCATTTCTCTGGTGTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_307142.p2 GENE.S_Transcript_307142~~S_Transcript_307142.p2 ORF type:complete len:379 (+),score=76.45,UBN2_3|PF14244.2|1.5e-44,Retrotrans_gag|PF03732.13|3.2e-09 S_Transcript_307142:724-1860(+)
MAAESDTASPNVVIDIHNELYIHHGEVSSNFMLATQKLNGDNFSEWKRSAEIALSAKNKLGFVQGTCAKPEPNSPLLPHWERCNNLVITWILHSVDSEIGRSILYYHTASEIWNELVDRYGQSNAPRKYQVHKHISEIGQGSSTVTDYYTALKTSWDEYLSLITLPACTCGAGNAFLGILLEQQVLQFLLGLNDDYIHTRGNLLMMQPLPNLSQAYRYVFQEEKQRQCGASVSLGSDSTALAAQKGPYVGNQKFGNKWSRHTNNSPGNDYQSSISMQSYPNTFSGPSQHAQRPVYGISPNGRRSKYFCDHCKVFGHSIDRCYKVHGYPPDKGKKIANYAQHDPVIDISGGSVSSPAVDGSSSHNLTSDQIQHLISLVS*

Click here to download the sequence:
Link to NCBI Protein BLAST