Transcript Information: S_Transcript_307149.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.8783168724482
Replicate 20.43688692193099
Replicate 30.66953827366207
Condition 2: 8 Hour
Replicate 10.70380826129152
Replicate 21.2551862273114
Replicate 31.0552399804446
Condition 3: 24 Hour
Replicate 10.43257195030879
Replicate 20.14959611601549
Replicate 30.74916963579553


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_307149.p2 GENE.S_Transcript_307149~~S_Transcript_307149.p2 ORF type:complete len:303 (+),score=42.30,UBN2_3|PF14244.2|1e-46,UBN2|PF14223.2|3.8e-08,UBN2|PF14223.2|0.53,Retrotrans_gag|PF03732.13|1.6e-09 S_Transcript_307149:1810-2718(+)
ATGAAAGAGAAAGGCATCACATCATTCAATTTCCTTGTGATCTCTTTTATTCTTTATGGTATCAGAGCCTTGTCTTTGATCCTTGACATGGAAGACGAGAAGAAATCTTCAGCTACCAACCCCCTTTATGCTCTTGCTACAAATGATAACCCAGGAACTGTCATAACCCACGTAGTTCTCAAGGGGCCAAATTATGAAGAATGGGCTAAAGGGTTTCGAGTTTCCTTGGGCGCAAAACGGAAATTGGGGTTCATTAATGGCTCTGTTCCGCAGCCTAAAGATGGGTCTGCTGATCTTGATGATTGGTGGACAGTTAATTATATGATTGTTGCTTGGATTTTCAATACAATTGATCCAAGCATTCGCTCTACAATCTCATATCGCGACACAGCTCGTGAATTATGGGATGACATTAAACAACGGTTCTCTTCGGGAAATGGTGTTAAAATCTACCAGTTGAAGTCAGAGATAGCTGATTGCAAACAGAAGAATGGAGAGTCTATTATGGACTACTATGGAAGATTAAAGAAATTATGGGATGACATCAATGACTTTGATGCTTTACCTTCATGCTCATGCTCAGGCTGTAAATGTGGTATGAATGCAGTTTATCGTAAACGGCGCGAAACTAATCAGGTACGTGAATTTCTAATGGGTCTTGAGGCTTATTATGCCAATGTTCGATCAAACATTTTGGGCATCGAACCTTTGCCATCTCTTCACTCTGTGTATTCAAGACTACTACAAGAAGAGGAAGTGCGCTTCTTGACTCAGCGGAGGGCAGAAGCAGCCGCACCTATGGCCTTTGCTGTTCGGAACAATGCATCGCAAGGGTCAAGGACAGGGGGGGCTGCACGTTCTCTACTAAAATGCAGTTACTGTAATAAGCCAGGTCACCCCCGAGGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_307149.p2 GENE.S_Transcript_307149~~S_Transcript_307149.p2 ORF type:complete len:303 (+),score=42.30,UBN2_3|PF14244.2|1e-46,UBN2|PF14223.2|3.8e-08,UBN2|PF14223.2|0.53,Retrotrans_gag|PF03732.13|1.6e-09 S_Transcript_307149:1810-2718(+)
MKEKGITSFNFLVISFILYGIRALSLILDMEDEKKSSATNPLYALATNDNPGTVITHVVLKGPNYEEWAKGFRVSLGAKRKLGFINGSVPQPKDGSADLDDWWTVNYMIVAWIFNTIDPSIRSTISYRDTARELWDDIKQRFSSGNGVKIYQLKSEIADCKQKNGESIMDYYGRLKKLWDDINDFDALPSCSCSGCKCGMNAVYRKRRETNQVREFLMGLEAYYANVRSNILGIEPLPSLHSVYSRLLQEEEVRFLTQRRAEAAAPMAFAVRNNASQGSRTGGAARSLLKCSYCNKPGHPRG*

Click here to download the sequence:
Link to NCBI Protein BLAST