Transcript Information: S_Transcript_307399.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value1E-89
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.7334655216225
Replicate 29.1785765342633
Replicate 36.8147577776612
Condition 2: 8 Hour
Replicate 18.1554464261904
Replicate 28.0931752185058
Replicate 39.0881520796432
Condition 3: 24 Hour
Replicate 19.4266034701014
Replicate 28.6087346297754
Replicate 37.038710066544


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_307399.p1 GENE.S_Transcript_307399~~S_Transcript_307399.p1 ORF type:complete len:387 (+),score=16.59,zf-RING_2|PF13639.2|7e-15,zf-rbx1|PF12678.3|9.3e+03,zf-rbx1|PF12678.3|3.6e-10,zf-RING_11|PF17123.1|1.9e+03,zf-RING_11|PF17123.1|1.7e-09,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4_2|PF13923.2|9e+03,zf-C3HC4_2|PF13923.2|3.6e-07,zf-C3HC4_3|PF13920.2|4.8e-06,zf-ANAPC11|PF12861.3|7.9e+02,zf-ANAPC11|PF12861.3|6.4e-06 S_Transcript_307399:348-1508(+)
ATGCAAAATCTTGTTCACACAACAACTAGCATCATACCGATTATTTTCTCTCTCCTAATAATCCAATCTACAGCCCTCGAAAGTTGCGCCCCTTTCTCGTGCAATCGTCATCGCCGTGACACAATCCAGTTCCCATTTTGGGTGCCCCGAACCCAATCAAACCGGTGCGGATATCCGGGTTTCAACCTCTCATGTGACGGCGACGAAACACTCCTCCACCTCAAAAATTCCAACCCCTTCACTGTACGTGCAATCGATTACCCAGACCAGCTCATTTGGGTCACCGACCCGAACCGTTGTCTCCCAAAACGGGTCCTGGAGTTGAACCTGACCAAAACACCGTTCGTGTCGGGTCCGTCAAACACAGAGTACTCCTTCCTGAACTGCTCAAGTGCGGTGAATAATAATGATTCGGTTTTTGTTCCAGACGGTACGTCGGTAGTTTCTTGCTTAAGTGAGAGGAATTTCACGGTGTTTTTGACATTTGAGAAAGGGTCGGAACAGAAGATGGTGAATGAATGGAAGTGTAAAGTAATTAAGAGGGTGGTTGCTCCCATTTGGTGGCCGGATTTCGGGTACGGGTTTATTCCACCCGATTTGAGTAATGTTTTCTTACAGTTGAGCTGGGATATTCCTGATTGTGGGGATTGTCAACTTCGGGGCGGGTCTTGTGGGTTTGTGTCGGATTCGGGTTTCTCTGTTGGTTGCTTTCTTCCCAACGGCGATGGTGGTCTTTCAAGGAGTGCTGAAGTTGGTGTAATACTGGGAGCTGGAATACCTGGCCTGATATGCATGATTGCACTTACATTTTACATCAGCGGCAAGGTCAGAGCTTCCAGCCGGAATCAACGCCGTGCTATTACCGAATCTTCACCAGCAATCTTCCCACAACCATTTACCATTACATTGGGCCTAGATAGGTGCACCATAGAATCTTACCCCAAGACTGTATTGGGGGAGAGTAAGCGACTCCCAAAGCCTAGTGATGGCACCTGTCCTATATGCTTGTCAGAATATCAGCCCAAGGAGACTTTGAGGTCAATACCAGAATGCAACCACTATTTCCACGCTGAGTGCATAGACGAGTGGCTCAGGATGAATGCAACATGCCCTTTATGCCGGAATTCACCCCAAAGATCTTCTGGGGCAGCTGCCTTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_307399.p1 GENE.S_Transcript_307399~~S_Transcript_307399.p1 ORF type:complete len:387 (+),score=16.59,zf-RING_2|PF13639.2|7e-15,zf-rbx1|PF12678.3|9.3e+03,zf-rbx1|PF12678.3|3.6e-10,zf-RING_11|PF17123.1|1.9e+03,zf-RING_11|PF17123.1|1.7e-09,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4_2|PF13923.2|9e+03,zf-C3HC4_2|PF13923.2|3.6e-07,zf-C3HC4_3|PF13920.2|4.8e-06,zf-ANAPC11|PF12861.3|7.9e+02,zf-ANAPC11|PF12861.3|6.4e-06 S_Transcript_307399:348-1508(+)
MQNLVHTTTSIIPIIFSLLIIQSTALESCAPFSCNRHRRDTIQFPFWVPRTQSNRCGYPGFNLSCDGDETLLHLKNSNPFTVRAIDYPDQLIWVTDPNRCLPKRVLELNLTKTPFVSGPSNTEYSFLNCSSAVNNNDSVFVPDGTSVVSCLSERNFTVFLTFEKGSEQKMVNEWKCKVIKRVVAPIWWPDFGYGFIPPDLSNVFLQLSWDIPDCGDCQLRGGSCGFVSDSGFSVGCFLPNGDGGLSRSAEVGVILGAGIPGLICMIALTFYISGKVRASSRNQRRAITESSPAIFPQPFTITLGLDRCTIESYPKTVLGESKRLPKPSDGTCPICLSEYQPKETLRSIPECNHYFHAECIDEWLRMNATCPLCRNSPQRSSGAAAL*

Click here to download the sequence:
Link to NCBI Protein BLAST