Transcript Information: S_Transcript_307616.p1


Annotated TAIR IDAT5G23890.1
Annotated Gene NameLOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:8058789-8063005 | Forward length=946
E-Value5E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.7461589131359
Replicate 21.4433600645103
Replicate 30.51708605841871
Condition 2: 8 Hour
Replicate 11.3951189927096
Replicate 21.0454134878377
Replicate 30.59764058705555
Condition 3: 24 Hour
Replicate 10.61247336889516
Replicate 20.6354339694303
Replicate 30.47144008233862


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_307616.p1 GENE.S_Transcript_307616~~S_Transcript_307616.p1 ORF type:3prime_partial len:107 (+),score=9.37 S_Transcript_307616:1040-1357(+)
ATGACTTACATGAATAAAACTGTAGATTTATTCTTCTTCTCTTTTATTTGTGTGTGTAAAGAGATAGAGGAAGATTTAAACAGTAGTTCACTCCTGAAAGCCATTTGTGATGAGATGAGAATGAGCTCTCTTGAACTTAATCCTAGGCTCCTTGCTTATATATACAACTTGGTCATCGTTACATTTACTCATGATTCAAAGTGCCCACTAGTTGTGTCCTTTACTCAATCTCAGGTCATTGAGAGTGATGCTCAACCAGGTGATCTTTGTACGCGTCGTGAGTATGCCCGTTGGCTAGTTTCTGCTAGTAGTGCTCTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_307616.p1 GENE.S_Transcript_307616~~S_Transcript_307616.p1 ORF type:3prime_partial len:107 (+),score=9.37 S_Transcript_307616:1040-1357(+)
MTYMNKTVDLFFFSFICVCKEIEEDLNSSSLLKAICDEMRMSSLELNPRLLAYIYNLVIVTFTHDSKCPLVVSFTQSQVIESDAQPGDLCTRREYARWLVSASSAL

Click here to download the sequence:
Link to NCBI Protein BLAST