Transcript Information: S_Transcript_307886.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.19568383261162
Replicate 20.48667918141577
Replicate 30.81365012133532
Condition 2: 8 Hour
Replicate 10.31360868113431
Replicate 21.6449888705681
Replicate 31.5673417356604
Condition 3: 24 Hour
Replicate 10.64249657325277
Replicate 20.16664567335549
Replicate 30.55636862658344


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_307886.p2 GENE.S_Transcript_307886~~S_Transcript_307886.p2 ORF type:5prime_partial len:136 (+),score=26.41,UBN2_3|PF14244.2|8e-40,Retrotrans_gag|PF03732.13|1.3e+03,Retrotrans_gag|PF03732.13|2e-07 S_Transcript_307886:1-408(+)
GATCATCCAGGTTTAATGATGGTTTCAAAGGTGTTTGATGGCTCTAGTTTTGGTGCTTGGAAGAAATCTTTTAGCATAGCACTTTCTGCCAAAAACAAGCTAGGTTTTGTCACAGGGACAGTTCAGAAACCAATCTCCACTTCTCCAATCTTTGAATACTGGCAGAGATGTAATGAAATGGTCACTGCTTGGTTATTGAATGTTTTGTCAAGAGAAATTGCAGACAGTGTGATCTACTCCAATTCAGCTCAAGAAATTTGGCAAGAACTTAATGATCGTTATGGTCAAGCTACTAGTCCTAAGTTGTATCAATTACAGAAAGATATATGCTCAATGTCTCAAGAAAACACAGACATAGCATCATATTTCACAAAATTCAAGGCTCTTTGTGATGAATTCAATACCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_307886.p2 GENE.S_Transcript_307886~~S_Transcript_307886.p2 ORF type:5prime_partial len:136 (+),score=26.41,UBN2_3|PF14244.2|8e-40,Retrotrans_gag|PF03732.13|1.3e+03,Retrotrans_gag|PF03732.13|2e-07 S_Transcript_307886:1-408(+)
DHPGLMMVSKVFDGSSFGAWKKSFSIALSAKNKLGFVTGTVQKPISTSPIFEYWQRCNEMVTAWLLNVLSREIADSVIYSNSAQEIWQELNDRYGQATSPKLYQLQKDICSMSQENTDIASYFTKFKALCDEFNT*

Click here to download the sequence:
Link to NCBI Protein BLAST