Transcript Information: S_Transcript_309206.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.71927030365353
Replicate 20
Replicate 30.2492261632919
Condition 2: 8 Hour
Replicate 10.28818095023153
Replicate 20.30232227891523
Replicate 30
Condition 3: 24 Hour
Replicate 10.59040225650254
Replicate 20.15313386200235
Replicate 30.17041921895349


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_309206.p2 GENE.S_Transcript_309206~~S_Transcript_309206.p2 ORF type:complete len:148 (+),score=24.91,UBN2_3|PF14244.2|1.4e-31 S_Transcript_309206:1848-2291(+)
ATGGCCGCCGAAGCAATTCCTGCGCCTGCAACAATTAATCATGCGAATCCTCTTTTTCTTCATGCTTCAGATCATCCACTGGTTTCCAAAGTCTTCGATGGTTCCGGTTTTGGTGCTTGGAAGAAGTCCTTTAGCATTGCGCTTTCAGCTAAAAACAAGCTAGGTTTTGTTACTGGAAAGGTTCAAAAACCTCCGTCGTCTTCACCACAGTTTGAGTTCTGGCAAAGATGCAATGATATGGTTACGGCATGGATCCTGAATGTTTTGTCCAGAGAAATTGCTGAGAGTGTCATCTATTCTGATTCTGCGCAAGAAATTTGGGAAGAACTCAATGAAAGATATGGTCAGGCAACAGGACCAAATTGTATCAGCTTCAAAAGGAAATTTGCTCTATGGCTCAAGACAGTAACAAACTATAACTTAATATTAACAGGTTTCCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_309206.p2 GENE.S_Transcript_309206~~S_Transcript_309206.p2 ORF type:complete len:148 (+),score=24.91,UBN2_3|PF14244.2|1.4e-31 S_Transcript_309206:1848-2291(+)
MAAEAIPAPATINHANPLFLHASDHPLVSKVFDGSGFGAWKKSFSIALSAKNKLGFVTGKVQKPPSSSPQFEFWQRCNDMVTAWILNVLSREIAESVIYSDSAQEIWEELNERYGQATGPNCISFKRKFALWLKTVTNYNLILTGFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST