Transcript Information: S_Transcript_30993.p1


Annotated TAIR IDAT3G10650.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3325562-3330819 | Reverse length=1309
E-Value1.8E-81
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9406351747059
Replicate 26.0233824845009
Replicate 35.5241892793312
Condition 2: 8 Hour
Replicate 15.8220644391549
Replicate 26.1077589890049
Replicate 35.7196970172493
Condition 3: 24 Hour
Replicate 15.4186216458728
Replicate 24.7731896455646
Replicate 35.0365392883851


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_30993.p1 GENE.S_Transcript_30993~~S_Transcript_30993.p1 ORF type:internal len:641 (+),score=141.91 S_Transcript_30993:3-1922(+)
TCTCTCTCTCTCTCCTCCGCTCCGAATCCAATATCCAATTTTCAATTTCGTCTCTGCCCTCCCTTTCCCCATTCTCTCTCCACAATAAAAACCCTAATTTCAGTGTCTGCGCTCTTTCTCTCTCTTTCCCCCTTTTCCCTCCATCGCATTCATTCATTCATTCTCTACTTTCTTTCTCCTCTCATGGAAAGAAGCGGTGGTGGAGCCGGTGGGGCATTCCGGAGGAGGCCGTTCAGGAGGGCCAAAGCGACGCCGTACGATCGGCCCCCAACCGCCTTACGACCCGCTCAAGCGGCGGCGGCGTCTGGGAAAAGCAATTGGTTCTCGTCGAAGCTTCTGGATCCTGCTTCCAGGCTTATCACTGCCGGTGCTCATAAGCTCTTCGCTTCTGTCTTTCGTGGACGTCTTTTACCCTCTCCTCCTCAGCCACCTCAGCACCCTCCAGATGAGAGCACAGAGATAAGGGATGTGCAGCCAGAAGCCACACCTGTTGTGGTCCCTTCTAGCGCCAGGGAGCCAACCATTGGTGGAGGTAATGATGCAAGTAGAATTTCTGACAGTAATGGGGTTTCTGAACTTGAGGATATATTGAAGCAGAAGACCTTTACAAGGTCTGAGATAGATCATTTAACTGCGTTGCTGCTCTCAAGAACAGTTGATGGTTCGGTTGGTGCTGGGAAAGGAAGGTCTGAACCAAAATTTCCAGACCAGTGGGCTATTCACGGTAGACACAGTAATGAGACTGATCTTGCTGTTCATGAAAATGAAATAGATCGTGGGGCTCCTGCAATCATCACAACTCCTACATTGAGATCAAAAGTTGTTGAAGAGGATGTTGCTTCACCTGCTGAACTTGCCAAAACCTACATGGGTAGCAGGCCTACAAGAGTATCCCCATCAGTGTTGAGTTTGCAAAACCAAATACCTCGGGAAGACTTATCCGCTTCTCATAATCCACCTTTTAAGCTGAGGTCCCCAGGAACGTCTCTTCTTCAGAAGCCTGTCAGTGATATTGGAACCTCTGAAAATGGTTTTGTGACTCCAAGATTTCGAGGAAGATCTGCAATATACAGCATGGCTCGTACTCCATATTCTAGGATTCATCCAGCAACATCGTTAAAGGCTGCTGAAAATGCTTTTGATGCCCGTGCTGGATCATCATCATCTCAAAATGAGACAGAGAACAATCTATTTAACGGCTCTAGGAAACAGGTTTTGAAGCGCAGGAGTTCTGTTCTGGAAAATGATATCGGTTCTGTTGGTCCCATCCGAAGGATTCGTCAAAAACCTAATCTTTTGCATCCTAAAACCTTAAGCCTGCCTGCTTCCGGTGGTCCTCGTGCGACACACGGACCTGGAGTGCTTCTTGACGCTCCGGAACTCCCAACTTCTTTTAGTCAGGGTTCTCATATACATTCATTGTCTAAAGTGACTGCAGAAAATAGCGTACCTAGTACTAGTAGTGGTTATGTTCCTTCTCAATCTATCGAGATGGCTGAAAAGATCTTTCAGCAACTCGACAAAATCACTCCGAAGGGAAAATCCTCGGAGTTGAAAATCGACATTGCAGGAGGGAATTCATCTGCTAAGATGACACCTCAAATGCTAGGTGGACTGGCTCGTAGAAGCATGGAGACTGTAGATTCCATGAAGGTCTTGCAAAGTATTCGAGATAGTAAGAGAGAAAATGGTCAAGTGGACTCTGTTGATACATGTTTTATTCCACCTAAGATATCATCTAAGGTGGAGGAAACTAGCATGAAAAAGTTTGAGGTTTCCTCTGATAATGTGGCTACCCAAAATGGTGCTGAGGCTATAGTGCAAACTTCTCATTCATCAGATAATGGCAATAGCAAGCATATGGACTCTGTAAAGTCACAGTCAGGTCCTGATCAACCACCAAAAAAGCGAGCATTTCAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_30993.p1 GENE.S_Transcript_30993~~S_Transcript_30993.p1 ORF type:internal len:641 (+),score=141.91 S_Transcript_30993:3-1922(+)
SLSLSSAPNPISNFQFRLCPPFPHSLSTIKTLISVSALFLSLSPFSLHRIHSFILYFLSPLMERSGGGAGGAFRRRPFRRAKATPYDRPPTALRPAQAAAASGKSNWFSSKLLDPASRLITAGAHKLFASVFRGRLLPSPPQPPQHPPDESTEIRDVQPEATPVVVPSSAREPTIGGGNDASRISDSNGVSELEDILKQKTFTRSEIDHLTALLLSRTVDGSVGAGKGRSEPKFPDQWAIHGRHSNETDLAVHENEIDRGAPAIITTPTLRSKVVEEDVASPAELAKTYMGSRPTRVSPSVLSLQNQIPREDLSASHNPPFKLRSPGTSLLQKPVSDIGTSENGFVTPRFRGRSAIYSMARTPYSRIHPATSLKAAENAFDARAGSSSSQNETENNLFNGSRKQVLKRRSSVLENDIGSVGPIRRIRQKPNLLHPKTLSLPASGGPRATHGPGVLLDAPELPTSFSQGSHIHSLSKVTAENSVPSTSSGYVPSQSIEMAEKIFQQLDKITPKGKSSELKIDIAGGNSSAKMTPQMLGGLARRSMETVDSMKVLQSIRDSKRENGQVDSVDTCFIPPKISSKVEETSMKKFEVSSDNVATQNGAEAIVQTSHSSDNGNSKHMDSVKSQSGPDQPPKKRAFQ

Click here to download the sequence:
Link to NCBI Protein BLAST