Transcript Information: S_Transcript_30994.p2


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value9.6E-101
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.90127928635
Replicate 223.065643628311
Replicate 318.337947810398
Condition 2: 8 Hour
Replicate 120.356054393627
Replicate 224.40565306152
Replicate 321.073622064016
Condition 3: 24 Hour
Replicate 117.624849179911
Replicate 215.96768542879
Replicate 317.483462599001


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_30994.p2 GENE.S_Transcript_30994~~S_Transcript_30994.p2 ORF type:complete len:176 (+),score=22.15,AAA_12|PF13087.2|1e-27 S_Transcript_30994:2481-3008(+)
ATGTCAATAAATGGTGCTCTTAGACAGCAACTTTACAAGGAAATCGAGGTGGCGAGTGTTGATTCATTCCAGGGCAGAGAAAAGGATTACATTATCTTGTCTTGTGTCAGGAGTAATGAGCATCAGGGAATCGGGTTTCTTAATGATCCCCGCAGGCTCAATGTTGCTCTAACACGTGCCCGTTATGGTATTGTCATATTGGGAAATCCGAAAGTTCTGAGCAAGCAGCCGCTCTGGAATAGTTTGTTGACACATTACAAGGAACATGAGTGCTTGGTGGAAGGACCTCTCAACAACTTGAAGCAAAGTATGGTTCAATTTCAGAAGCCCAAGAAGATCTACAATGATCGCAGACTTTTCTATGGTGCGGCAGCCGGTGTTGTGCCCAATGATAACTTTGCGCCAGTTTCAACGAGTGGTTCAAATGCTGATAGAAGAGGCGGTCGTGCTAGAGGTTATATGCCTCGTGGTCCACCCAATGGTACCCACAAACCAGGAGTTCATCCTTTTTTTTGCAGTATTATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_30994.p2 GENE.S_Transcript_30994~~S_Transcript_30994.p2 ORF type:complete len:176 (+),score=22.15,AAA_12|PF13087.2|1e-27 S_Transcript_30994:2481-3008(+)
MSINGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGAAAGVVPNDNFAPVSTSGSNADRRGGRARGYMPRGPPNGTHKPGVHPFFCSII*

Click here to download the sequence:
Link to NCBI Protein BLAST