Transcript Information: S_Transcript_31008.p1


Annotated TAIR IDAT1G09570.1
Annotated Gene Namephytochrome A
Annotated Gene Symbol(s)PHYA, FHY2, FRE1, HY8
Annotation TypeOrtholog
Chromosome Positionchr1:3095498-3099216 | Reverse length=1122
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.575354157804
Replicate 221.787986128862
Replicate 320.70705777358
Condition 2: 8 Hour
Replicate 148.418501858829
Replicate 246.674363932526
Replicate 343.902301784281
Condition 3: 24 Hour
Replicate 121.08692045133
Replicate 216.816386881382
Replicate 320.195587157121


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_31008.p1 GENE.S_Transcript_31008~~S_Transcript_31008.p1 ORF type:complete len:1124 (+),score=254.85,PHY|PF00360.16|1.3e-58,PAS|PF00989.20|6.1e-20,PAS|PF00989.20|2e-25,PAS_2|PF08446.7|5.5e-39,PAS_2|PF08446.7|2.9e+03,PAS_2|PF08446.7|1.1e+03,GAF|PF01590.22|1.6e-32,PAS_9|PF13426.2|3e-06,PAS_9|PF13426.2|0.001,PAS_4|PF08448.6|6.4e-10,PAS_4|PF08448.6|1.8e+02,HATPase_c|PF02518.22|2.2e-08 S_Transcript_31008:446-3817(+)
ATGTCTTCATCAACAACGAGTCAGGGATCCAGCAACTCAGGCCGTGGAAAGCATAGTGCAAGGATTATAGCTCAAACTATTGCTGATGCAAAGCTTCATGCCGATTTCGACAAGTCTAGTAGTGAATTTGACTACTCTAGCTCTGTTCGTGCCAGCTCTGGTGGTGGAAAACCCCAAACAAAATCCGACAAAGTTACCTCATCTTATCTCCTTCAGATACAAAAAGGCGAACTAATTCAGCCCTTCGGATGCTTGCTGGCTCTTGATGAGAAGACTTTCAGGGTCATTGCCTACAGTGAGAATGCCCCTGAAATGCTAACTATGGTCAGTCATGCTGTCCCTAGTGTAGGGGATCATCCAGTTATCGGGATCGGAACTGATCTCAGGACCATATTCACTGCTCCAAGTGCATCTGCATTACAGAAGGCGTTAGGATTTACTGATGTTTCTCTGCTGAATCCAATCTTAGTACATTGCAAAACTTCTGGCAAACCCTTCTATGCAATTATCCATAGGGTGACTGGAAGCTTAGTCATTGACTTCGAACCAGTGAAGCCGTATGAAGTCCCAATGACAGCTGCAGGCGCTCTACAATCTTACAAACTTGCAGCCAAAGCAATTACTCGTTTGCAGTCTTTGCCAAGTGGAAACCTAGATAGACTTGTTGACACAATGGTTCAAGAGGTGTTTGAGCTAACAGGATATGACAGAGTGATGGCATACAAATTCCATGACGATGATCATGGGGAAGTTGTGTCTGAGGTTACGAAGCCTGGCCTTGACCCATACTTGGGCTTGCATTACCCAGCAACAGATATCCCACAGGCTGCACGCTTTTTGTTTATGAAGAATAAGGTCCGTATGATCTGTGATTGCCGTGCAAAGTTTGTGAAGGTGATCCAAGATGAGAACCTACCATTCAATTTGACCTTGTGTGGTTCAACACTTAGGGCCCCACACGGTTGCCATGCTCAATACATGGAGAATATGGACTCTATCGGGTCATTGGTCATGGCTGTTGTAGTTAATGATGACGAGGAAGAGACTGCTGGTACAAATCCTGCGCAACCCCAGAAGAGGAAGAAGCTATGGGGTTTAGTGGTCTGCCATCATACATCTCCAAGGTTTGTACCATTTCCTCTGCGGTATGCTTGCGAGTTTCTGGCACAAGTCTTTGCCATCCATGTAAATAAAGAGTTAGAATTAGAAAACCAGTACCTTGAGAAGAAGATACTCCGTACTCAAACTCTTCTATGTGATATGCTGATGAGAGATGCTCCACTGGGTATTGTCACTCAGACCCCGAACATAATGGATCTTGTTAAATGTGATGGCGCTGCTCTTCTGTATAATAACAAGGTGTGGAAACTGGGGGTCACTCCTACAGATTACCAAATACGAGATATAGCAGTATGGCTATCACAGGACCATATGGATTCGACAGGGTTGAGCACAGATAGCTTGTATGATGCTGGGTACCCTGGTTCACTTGCTCTTGGTGATTCTGTTTGTGGGATGGCAGCTGTGAGGATAACTTTGAAAGACATGATCTTCTGGTTCCGGTCCCACACTGCTGCCGAAATTAAGTGGGGTGGGGCAAAGCATCAGCCTGGTGAGATGGATGATGGCACAAAGATGCATCCAAGGTCATCATTCAAGGCTTTCCTTGAGGTCGTTAAGAGGAGGAGTGTACCTTGGAAGGATTATGAGATGGATGCTATTCACTCATTACAGCTTATTCTGAGGAATGCTTTTAAGAATATGGAAGCTGCAGATTTGAATACATCCGTAATCCACTCTAAGATCAGTGACCTCAAAATTGATGGCTTGCGAGAGCTTGAGGTAGTGACTGGTGAGATGGTCCGGTTGATTGAAACAGCTTCAGTACCCATTTTTGCAGTTGATGCTGATGGATTGGTTAATGGTTGGAATTCAAAGATTTCTGAGCTGACTGGTCTTCCAGTTGTAGAAGCTGTTGGAAAGCATATCGCCATGCTTGTTGAGGACTCTTCGATTGATATAGTCCAAAATATGTTGCGCTTAGCACTTCAAGGAAAAGAGGAGAAGAACATTCAATTCGAGGTCAAAAGGCATCAGTCAATGGGAGATGCAAGTCCTATCAGCTTAGTAGTGAATGCTTGTGCAAGCAAAGACGTTCATGGAACTGTTGTAGGGGTTTGTTTCATTGCTCAGGACATAACTGGCCAGAAAACAGTTATGGACAAGTTCACACAGATAGAAGGTGATTACAAAGCAGTAGTTCAGAATCCCAATCCCTTGATTCCCCCAATATTTGGAACAGATGAATTTGGCTGGTGTTCAGAATGGAATCCTGCTATGGCAAAGCTTACAGGATGGAACCGGGAGGAGGTTATGGATAAGATGTTACTTGGGGAAGTTTTCGGGACCCAAAGATCATGCTGTCGCCTCAAGAACCAAGAGGCATTTGTCAATCTTGGCATAGTACTGAATGGTGCTATAAGCGGCCAGGAGGCTGAGAAGACTACCATTGGGTTTTTCACACGCAATGGGAAGTATATAGAATGTCTGCTTTGTGTGAGCAAGAAGCTGGATGCAGAAGGTGCCATTACTGGTGTCTTTTGCTTCTTGCAGCTTGCTAGTCAGGACTTGCAGCACGCACTTCATGTACAACGGTTAGCGGAGCAAGCTGCCCTAAAGAGGCTGAAAGCATTAGCTTACATGAAGAGACAGATAAGGAATCCTTTGTTTGGAATAATGTTCTCTAGGAAGATGCTCGAGGGGACTGACATGGGAGAAGAGCAGAGGCTGCTTTTGCATACAAGTGCCCTCTGCCAGCGCCAGCTTAACAAGGTCCTTGATGATTCAGATTTGGATGCCATCATCGATGGCTACCTTGAGCTGGAAATGGTTGAATTTGCAATGCACGACATACTGGTCGCTTCTATTAGCCAAGTTATGATGAAGAGCAATGAGAAGGGCATCCGAATAGTTAATGATTCTTCAGTGGACAGCATGAAGGAGACCTTATATGGGGATAGTTTGAGGCTCCAGCAAGTTCTAGCTGAGTTCCTGTTAACTACAGTGAATTTTACTCCCGCTGGTGGTCAGATTGAACTTGGAGTTCGATTGACGAAAGATCAATTGGGAACGTCTGTTCAGCTTGCCAATTTAGAATTCAGGATATCACACACAGGGGGAGGGATATCGGAAGGATTACTGAGCCAGATGTTTGAGGGTAAGGAAGACCCTTCAGAAGAGGGCATCAGCCTGGTTATAAGCAGGAAGCTTGTGAAGCTGATGAATGGAGATATCCAGTATCTGAGATCTGCTAGGAACTCAACTTTCATCATTTCTGTTGAACTTGCTATGGCTGAGAGATCCATGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_31008.p1 GENE.S_Transcript_31008~~S_Transcript_31008.p1 ORF type:complete len:1124 (+),score=254.85,PHY|PF00360.16|1.3e-58,PAS|PF00989.20|6.1e-20,PAS|PF00989.20|2e-25,PAS_2|PF08446.7|5.5e-39,PAS_2|PF08446.7|2.9e+03,PAS_2|PF08446.7|1.1e+03,GAF|PF01590.22|1.6e-32,PAS_9|PF13426.2|3e-06,PAS_9|PF13426.2|0.001,PAS_4|PF08448.6|6.4e-10,PAS_4|PF08448.6|1.8e+02,HATPase_c|PF02518.22|2.2e-08 S_Transcript_31008:446-3817(+)
MSSSTTSQGSSNSGRGKHSARIIAQTIADAKLHADFDKSSSEFDYSSSVRASSGGGKPQTKSDKVTSSYLLQIQKGELIQPFGCLLALDEKTFRVIAYSENAPEMLTMVSHAVPSVGDHPVIGIGTDLRTIFTAPSASALQKALGFTDVSLLNPILVHCKTSGKPFYAIIHRVTGSLVIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGNLDRLVDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKFVKVIQDENLPFNLTLCGSTLRAPHGCHAQYMENMDSIGSLVMAVVVNDDEEETAGTNPAQPQKRKKLWGLVVCHHTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQYLEKKILRTQTLLCDMLMRDAPLGIVTQTPNIMDLVKCDGAALLYNNKVWKLGVTPTDYQIRDIAVWLSQDHMDSTGLSTDSLYDAGYPGSLALGDSVCGMAAVRITLKDMIFWFRSHTAAEIKWGGAKHQPGEMDDGTKMHPRSSFKAFLEVVKRRSVPWKDYEMDAIHSLQLILRNAFKNMEAADLNTSVIHSKISDLKIDGLRELEVVTGEMVRLIETASVPIFAVDADGLVNGWNSKISELTGLPVVEAVGKHIAMLVEDSSIDIVQNMLRLALQGKEEKNIQFEVKRHQSMGDASPISLVVNACASKDVHGTVVGVCFIAQDITGQKTVMDKFTQIEGDYKAVVQNPNPLIPPIFGTDEFGWCSEWNPAMAKLTGWNREEVMDKMLLGEVFGTQRSCCRLKNQEAFVNLGIVLNGAISGQEAEKTTIGFFTRNGKYIECLLCVSKKLDAEGAITGVFCFLQLASQDLQHALHVQRLAEQAALKRLKALAYMKRQIRNPLFGIMFSRKMLEGTDMGEEQRLLLHTSALCQRQLNKVLDDSDLDAIIDGYLELEMVEFAMHDILVASISQVMMKSNEKGIRIVNDSSVDSMKETLYGDSLRLQQVLAEFLLTTVNFTPAGGQIELGVRLTKDQLGTSVQLANLEFRISHTGGGISEGLLSQMFEGKEDPSEEGISLVISRKLVKLMNGDIQYLRSARNSTFIISVELAMAERSMR*

Click here to download the sequence:
Link to NCBI Protein BLAST