Transcript Information: S_Transcript_310346.p1


Annotated TAIR IDAT1G34160.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:12441393-12443225 | Forward length=581
E-Value1.2E-226
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.56902798693642
Replicate 21.0160495190961
Replicate 30.69766929263621
Condition 2: 8 Hour
Replicate 12.2798525832461
Replicate 22.612502061547
Replicate 32.3138913518565
Condition 3: 24 Hour
Replicate 10.86229803252345
Replicate 20.78279612352516
Replicate 31.2445087699893


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_310346.p1 GENE.S_Transcript_310346~~S_Transcript_310346.p1 ORF type:5prime_partial len:608 (+),score=102.11,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|8.1e-05,PPR|PF01535.16|8e-08,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.057,PPR|PF01535.16|2.5e+03,PPR_2|PF13041.2|2.4e-05,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|0.0002,PPR_2|PF13041.2|5e+02,PPR_2|PF13041.2|0.00087,PPR_2|PF13041.2|1e-09,PPR_2|PF13041.2|4.7e-05,PPR_2|PF13041.2|3.3,PPR_2|PF13041.2|4.2e+02,DYW_deaminase|PF14432.2|1e-37,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|0.066,PPR_1|PF12854.3|0.042,PPR_1|PF12854.3|0.0002,PPR_1|PF12854.3|0.062,PPR_1|PF12854.3|0.0098,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|9.8e+03,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.71,PPR_3|PF13812.2|0.022,PPR_3|PF13812.2|0.077,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|77,PPR_3|PF13812.2|1.4e+03 S_Transcript_310346:2-1825(+)
AAAGTACAAGTATCACCATTTGGCTCCAGAACCATTCAGAACTTAGTCCACAACCACAACCTCCACCTCCACCGCATGACCACCAAGCCCGCCACCATCCTCGTCGACATTCTAATCAAAAAGTGCAATTCTCTCTCGCACATCAAACAAATCCAATCCCACCTCATCACTACCGGCCTTTTCCAATCATCTTTCTCTTCTCACCGCACAAAGCTCTTAGAGCTCACTTCCATCTCCTCCTATGGAAACCTCTCGTACGCCACAATCATCTTCAATTCCATCAAAAACCCATCAACCTACGACTGGAATGCCATCATTCGAGGCCATGCCCAAAGCTCAACTCCCCAAACCGCCCTTGCCCTGTTCCTATCCATGTTGAGAGCTTCACAAAAGCCTGATGCTCTCACGTGCTCTTTCGCCCTTAAGGCCTGCGCACGTGCCTTGTCCAAAACTGAAACTCGTTGTATACATTCTCATGTGATTCGATCAGGGTTCAAGGCAGATTTGCTTTTGGAGACCACTTTGTTGGATGTTTATGCAAAAGTTGGGGAGTTTCGAGATGCTAAGAAGGTGTTCGATGAAATGCCTCAGAGAGATTTGGCTACTTGGAATGCGTTGATTTGTGGGTTTGCTCAAGGGAGTTTCCCTAATGAGGCTTTGGAGTTGTTTTATAGGATGAGCGGGTTGGGTTTGAAGGGTGATGAAATCACTGTGCTTGGAGCTCTTTCGGCGTGCTCTCAAGTGGGGGCTGTGAAAGAGGGGAATAAGGTGTGGGGTTATATAAAAGAGGAGAGTTTAGATATGACTCTGAATGTTTGTAATGCAGTGATTGATATGTATAGTAAATGTGGGTTTGTGGATAAAGCCTGTGATGTCTTTAGGAACATGAAGTGTGGGAAGAGTATCATAACGTGGAACACCATGATTATGGGGTTTGCTATGCATGGGCATGGCGTGGAAGCGATGGAGCTTCTTGAGGAGATGGGTAGAATTGGGGTTCGCCCTGATCCGATAAGCTATCTTGCTGTGTTGTGTGCCTGTAATCATGCGGGTTTGGTTGATGAGGGGTTTGAGTTGTTTAACTCGATGGAGGATAAAGGGATTGCTCGTAATGTGAAACATTATGGTACTCTTGTTGATTTGTTAGGAAGGGCAGGGAGGCTTTATGAGGCTTATGATATTATCAAGTCAATGCCTATTGTGCCTGATATTGTCCTGTGGCAAACATTGCTTGGTGCTTGCAAGACTTATGGGAATGTGGAGTTAGCTGAGATTGCGTCAAGGAAACTTGTTGGGATGGGATCAGATAGCTGTGGGAACTTTGTCCTGTTATCGAATATCTACGCTACGTATGAGAGGTGGAAGGATGTAGGGAGGGTTAGGGAGGCGATGAATAATAGGGATGTGAAGAAGGTGCCTGGGTTTAGCTACATTGAAGTGGATGGTGTTCTGCACAAGTTCATCAATGGAGATCAGAGGCACCCAAGTTGGAAAGAGATCTATGCAAAATTGGATGAAATTGTATATAGGATTAAGGAGCATGGATATGTTCCTGGAACTAGAGTTGTGTTGCATGACATAGGAGAGGAGGATAAAGAGTACTCATTGTCTTATCATAGTGAAAAGTTGGCTGTAGCCTTTGGGTTACTAAAAACCAGCCAAGGAACCCCTATTCAAGTTATTAAGAACCTTCGGATATGTGTGGATTGTCATGCAGTTATTAAGCTTGTTTCAAAAGTTTATAATCGTGAGATTATAGTTAGGGATCGAGCTCGCTTTCATCGGTTCAGGGATGGGGCTTGTTCTTGTAGGGATTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_310346.p1 GENE.S_Transcript_310346~~S_Transcript_310346.p1 ORF type:5prime_partial len:608 (+),score=102.11,PPR|PF01535.16|0.25,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|8.1e-05,PPR|PF01535.16|8e-08,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.057,PPR|PF01535.16|2.5e+03,PPR_2|PF13041.2|2.4e-05,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|0.0002,PPR_2|PF13041.2|5e+02,PPR_2|PF13041.2|0.00087,PPR_2|PF13041.2|1e-09,PPR_2|PF13041.2|4.7e-05,PPR_2|PF13041.2|3.3,PPR_2|PF13041.2|4.2e+02,DYW_deaminase|PF14432.2|1e-37,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|0.066,PPR_1|PF12854.3|0.042,PPR_1|PF12854.3|0.0002,PPR_1|PF12854.3|0.062,PPR_1|PF12854.3|0.0098,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|9.8e+03,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.71,PPR_3|PF13812.2|0.022,PPR_3|PF13812.2|0.077,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|77,PPR_3|PF13812.2|1.4e+03 S_Transcript_310346:2-1825(+)
KVQVSPFGSRTIQNLVHNHNLHLHRMTTKPATILVDILIKKCNSLSHIKQIQSHLITTGLFQSSFSSHRTKLLELTSISSYGNLSYATIIFNSIKNPSTYDWNAIIRGHAQSSTPQTALALFLSMLRASQKPDALTCSFALKACARALSKTETRCIHSHVIRSGFKADLLLETTLLDVYAKVGEFRDAKKVFDEMPQRDLATWNALICGFAQGSFPNEALELFYRMSGLGLKGDEITVLGALSACSQVGAVKEGNKVWGYIKEESLDMTLNVCNAVIDMYSKCGFVDKACDVFRNMKCGKSIITWNTMIMGFAMHGHGVEAMELLEEMGRIGVRPDPISYLAVLCACNHAGLVDEGFELFNSMEDKGIARNVKHYGTLVDLLGRAGRLYEAYDIIKSMPIVPDIVLWQTLLGACKTYGNVELAEIASRKLVGMGSDSCGNFVLLSNIYATYERWKDVGRVREAMNNRDVKKVPGFSYIEVDGVLHKFINGDQRHPSWKEIYAKLDEIVYRIKEHGYVPGTRVVLHDIGEEDKEYSLSYHSEKLAVAFGLLKTSQGTPIQVIKNLRICVDCHAVIKLVSKVYNREIIVRDRARFHRFRDGACSCRDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST