Transcript Information: S_Transcript_31201.p1


Annotated TAIR IDAT1G16720.1
Annotated Gene Namehigh chlorophyll fluorescence phenotype 173
Annotated Gene Symbol(s)HCF173
Annotation TypeOrtholog
Chromosome Positionchr1:5723161-5726248 | Forward length=598
E-Value4.9E-296
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 197.06845783854
Replicate 2113.61519481766
Replicate 3111.31215822902
Condition 2: 8 Hour
Replicate 139.838988429489
Replicate 235.364092590501
Replicate 340.642216100164
Condition 3: 24 Hour
Replicate 1118.28599875277
Replicate 2108.78629556647
Replicate 3117.32921397343


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_31201.p1 GENE.S_Transcript_31201~~S_Transcript_31201.p1 ORF type:complete len:675 (+),score=127.68,NAD_binding_10|PF13460.2|6.3,NAD_binding_10|PF13460.2|9.5e-08,NmrA|PF05368.9|4.6e-09,NmrA|PF05368.9|1.1e+03,CIA30|PF08547.8|2.6e+03,CIA30|PF08547.8|8.4e-09 S_Transcript_31201:201-2027(+)
ATGGCTGCTACAACAGCAGCAATGCATGTGTTAGCTCCTAGTAACACCACCAATCTCAACAACAATGGTGGGTTCATGAAAATCAGGAAAATGATGGTGTCAAGTGAAAGAATGAGAAGTACCCAGATTGTGTTTACACCTAAAGCATCAGCAACTGATGGGCCATCAACTAGTAAGAGAAAGATCAGAAGTTCCCAGAAAAAGAACAGTGGGAAAAACAAAAAGGAAGAGATTGTTGAAGATGGTGTGAAGGAAGATGAAAAGAGTGATGAAAATAATGAGGAATTGGAGAATAGTTCAAAGAATGTTGAAAGTGGGGTTATGAAGAACATTGAGGCAGTGAATCCAGTAGGGTTAGGGAGGAAATCAAGGCAGATTTTTGATCAAGTATGGAAGAAATTCTCAGGGTTGGGTCAGATTTCGAGGACCGAGTATGATGATGGTACTAGTAATAATTTGTTGGTGTATGGAGATGGAGCTCCCCTGTGTGAGTTCACTATCCCTGGTGCTCAGAACACTACTGTTCTTGTGGTTGGTGCCACCAGCCGTATCGGCCGCCTTGTTGTGAGGAAGCTCATGCTTAGAGGTTATACTGTCAAGGCCTTGGTGAGGAGAATAGATCAGGGAGTGACAGATATGCTCCCGAGATCTGTGGAACTGGTGATTGGTGATGTGGGTGATCCTAATACCATACAAGCTGCGGTGGAAGGTTGCAACAAAATCATTTATTGTGCCACTGCACGTTCAGCGATTACTGGTGATCTCAACCGAGTTGATAACCGTGGTGTCTATCATGTCGCCAAAGCACTTCAGGACTACAACAATAAGTTGGCGCAGCTTAGAGCAGGAAAAAGCAGCAAAAGCAAGCTTCTAATTGCAAAATTCAAATCACCGGATTCACTTGAAGGATGGGAGGTACGGCAGGGGACCTATTTCCAGGATGTGGTGGCCACAAAATATGATGGAGGAATGGATGCAAAGTTCATATTTAATGAGAATGGACTTGCCATTTTCTCAGGATATGTTTTCACCAGAGGAGGATACGTGGAACTTTCGAGAAAGCTTTCACTCCCCCTGCGTTTTACTCTAGATCGGTATGAAGGTCTCATTCTTGCTGTCGGTGGCAATGGTCGATCATATGTTGTAATCCTTGAAGCTGGTCCCCTTTCAGATGCATCTAAGAGCAAAATGTATTTTTCTCGTATTAACACAAAAGCAGGATTTTGTAGGGTAAGAGTTCCCTTTTCATCATTCCGTCCAGTGAATCCGAATGATCCACCTCTAGACCCGTTTCTTGTGCACACTTTGACTATACGCTTTGAGCCTAGAAAACAGAGACCAGTTGAAGGACCAAAAGGAATGAAGCAAGACCCACGGAGTTTTGAGCTGATTCTGGAATACATAAAAGCCTTACCTAGTGGACAGGAAACAGACTTCATTTTGGTGTCGTGTACAGGCTCAGGAATAGAGGCTTCAAGAAGGGACCAGGTCTTGAAAGCTAAGAAGGCTGGGGAAGATTCATTAAGAAAGTCAGGACTCGGGTACACAATTGTCCGTCCTGGTCCCTTGAAGGAAGAACCTGGTGGGCAACGTGCTCTCATATTTGATCAGGGTAACAGGATTTCTCAGGGTATAAGTTGTGCTGACGTAGCTGATATCTGCGTGAAGGCATTGCACGATTCAACAGCCAGAAATAAGAGCTTCGATGTGTGCTATGAATATGTGGCTGAGCAAGGACAGGAGCTTTACGAGCTGGTGGCTCATTTGCCTGATAAGGCAAATAATTACTTAACGCCAGCGCTGTCTGCTCTTGAGAAGAACACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_31201.p1 GENE.S_Transcript_31201~~S_Transcript_31201.p1 ORF type:complete len:675 (+),score=127.68,NAD_binding_10|PF13460.2|6.3,NAD_binding_10|PF13460.2|9.5e-08,NmrA|PF05368.9|4.6e-09,NmrA|PF05368.9|1.1e+03,CIA30|PF08547.8|2.6e+03,CIA30|PF08547.8|8.4e-09 S_Transcript_31201:201-2027(+)
MAATTAAMHVLAPSNTTNLNNNGGFMKIRKMMVSSERMRSTQIVFTPKASATDGPSTSKRKIRSSQKKNSGKNKKEEIVEDGVKEDEKSDENNEELENSSKNVESGVMKNIEAVNPVGLGRKSRQIFDQVWKKFSGLGQISRTEYDDGTSNNLLVYGDGAPLCEFTIPGAQNTTVLVVGATSRIGRLVVRKLMLRGYTVKALVRRIDQGVTDMLPRSVELVIGDVGDPNTIQAAVEGCNKIIYCATARSAITGDLNRVDNRGVYHVAKALQDYNNKLAQLRAGKSSKSKLLIAKFKSPDSLEGWEVRQGTYFQDVVATKYDGGMDAKFIFNENGLAIFSGYVFTRGGYVELSRKLSLPLRFTLDRYEGLILAVGGNGRSYVVILEAGPLSDASKSKMYFSRINTKAGFCRVRVPFSSFRPVNPNDPPLDPFLVHTLTIRFEPRKQRPVEGPKGMKQDPRSFELILEYIKALPSGQETDFILVSCTGSGIEASRRDQVLKAKKAGEDSLRKSGLGYTIVRPGPLKEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAEQGQELYELVAHLPDKANNYLTPALSALEKNT*

Click here to download the sequence:
Link to NCBI Protein BLAST