Transcript Information: S_Transcript_312587.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.27156123709368
Replicate 21.1256525284446
Replicate 30.75276473810615
Condition 2: 8 Hour
Replicate 10.21760602364421
Replicate 20.45656833958626
Replicate 30.21750864903042
Condition 3: 24 Hour
Replicate 10.44581394878764
Replicate 21.6188436840248
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_312587.p1 GENE.S_Transcript_312587~~S_Transcript_312587.p1 ORF type:3prime_partial len:98 (+),score=6.20 S_Transcript_312587:220-510(+)
ATGAAGAAGTACGTGCTAAAAAAACGTGCACCGTGGATGGATTGTTTGATGAATGATACCAGATGCAAGGAGCAATTACGTCTTGATAGACATTGTTTTGAGAAGTTGTGTGCCATTTTACAATCCAAAGGGGGGTTGGTGACTTCAAGAAATGTCACAATCAGAGAAATTGTAGCCCTATTTTTACATTGTCTTGCTCATAACTTGAAGAATAGGACTATCAAAGCTATTTTTATTCGCTCAGGAGAGACAATTAGTCGCCAATTTCACACTGTGCTTCAGGCAGTTTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_312587.p1 GENE.S_Transcript_312587~~S_Transcript_312587.p1 ORF type:3prime_partial len:98 (+),score=6.20 S_Transcript_312587:220-510(+)
MKKYVLKKRAPWMDCLMNDTRCKEQLRLDRHCFEKLCAILQSKGGLVTSRNVTIREIVALFLHCLAHNLKNRTIKAIFIRSGETISRQFHTVLQAVL

Click here to download the sequence:
Link to NCBI Protein BLAST