Transcript Information: S_Transcript_312604.p1


Annotated TAIR IDAT5G66540.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26556653-26559310 | Reverse length=524
E-Value2.6E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3440909714738
Replicate 21.5599952212384
Replicate 30.74516105388285
Condition 2: 8 Hour
Replicate 11.0770399150067
Replicate 21.581847883617
Replicate 31.291869551817
Condition 3: 24 Hour
Replicate 11.1032769439694
Replicate 21.8314191172806
Replicate 30.50953625060841


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_312604.p1 GENE.S_Transcript_312604~~S_Transcript_312604.p1 ORF type:5prime_partial len:99 (+),score=21.84 S_Transcript_312604:3-299(+)
CCTGAGGAAGTTTTCGCTGGTAAAGGTGATGTCAAGGAGGAAACCGAGTTGACAAAGGAGGACAGGAAGAGGAGGAGAGCAAAGAAGAAAAGAAAAATGAAAGGTAAAAGAGCCTTGTGCAGTTTCTGGATCTTTCAGCTTGTTCCCTATGTTACTCCTTGTTATGGAGAATGGAGCTGCTTCAGCTCTTGCTGGCTGAGCCGAGTGGATAAGCTCTTAGTTCACTTGGTTGCATGTCTGGATAACGTGCACATCACTATTTGGCAATATGCTTGTGTTATTTTGGAACTTGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_312604.p1 GENE.S_Transcript_312604~~S_Transcript_312604.p1 ORF type:5prime_partial len:99 (+),score=21.84 S_Transcript_312604:3-299(+)
PEEVFAGKGDVKEETELTKEDRKRRRAKKKRKMKGKRALCSFWIFQLVPYVTPCYGEWSCFSSCWLSRVDKLLVHLVACLDNVHITIWQYACVILELG*

Click here to download the sequence:
Link to NCBI Protein BLAST