Transcript Information: S_Transcript_313130.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value7E-49
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.74755621447136
Replicate 20.49579302376438
Replicate 30.41444350749664
Condition 2: 8 Hour
Replicate 10.3594166907382
Replicate 21.5082145150377
Replicate 30.47900781134789
Condition 3: 24 Hour
Replicate 10.4908962582156
Replicate 20.7639487048207
Replicate 31.1335750294434


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_313130.p1 GENE.S_Transcript_313130~~S_Transcript_313130.p1 ORF type:complete len:178 (+),score=29.67,RBM39linker|PF15519.2|1.4e-18 S_Transcript_313130:496-1029(+)
ATGTTGAGGTGGAATGATATTTACTTTCTCGCCTTGCAGGCTTTGAATGCTCGATCTAGAGCATTACTGATGCAGAAACTGGATCGCACTGGTACAGCTTCGAGCATTACTAGTTCACTGGGTGTAGCTGGGCTTAATGGTTCAGCACCTATCCAACAACCCATTCCGCTACCTATCAATGTGCAGGCTGGTATACCAGCTCCTACGCTTCCTGGCCAAATTCTTCCTTCTCCACCTTCCGAACCTGTTGGGACTCCAAGCGATTGTTTGTTGTTGAAGAATTTATTCGATCCAGCGACTGAGACTGAACCAGATTTTGACTTGGACATTAAAGAAGATGTCGAGGAGGAATGTTCAAAGCTTGGTCGAGTCAGACATATCTATGTTGACAAGCATAGTGCTGGTCATGTGTATTTACGTTTCGACAACATAGATGCAGCGAAGAAGGCTCAAAATGGAATGCATATGAGATGGTTTGCTCGCAGATTGATTTCAGCTATCTACATGGTAATGCACGTCTTGTACAACATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_313130.p1 GENE.S_Transcript_313130~~S_Transcript_313130.p1 ORF type:complete len:178 (+),score=29.67,RBM39linker|PF15519.2|1.4e-18 S_Transcript_313130:496-1029(+)
MLRWNDIYFLALQALNARSRALLMQKLDRTGTASSITSSLGVAGLNGSAPIQQPIPLPINVQAGIPAPTLPGQILPSPPSEPVGTPSDCLLLKNLFDPATETEPDFDLDIKEDVEEECSKLGRVRHIYVDKHSAGHVYLRFDNIDAAKKAQNGMHMRWFARRLISAIYMVMHVLYNI*

Click here to download the sequence:
Link to NCBI Protein BLAST