Transcript Information: S_Transcript_313131.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value1.2E-77
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.014954682276
Replicate 216.179379008844
Replicate 312.862626191639
Condition 2: 8 Hour
Replicate 112.139068334368
Replicate 213.423109183836
Replicate 313.554692835988
Condition 3: 24 Hour
Replicate 115.683506095811
Replicate 214.06318564481
Replicate 314.227819920835


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_313131.p1 GENE.S_Transcript_313131~~S_Transcript_313131.p1 ORF type:5prime_partial len:195 (+),score=42.95,RBM39linker|PF15519.2|6.8e-24 S_Transcript_313131:1-585(+)
ATTAAGGTTTCATTGGTCACTGAACATGTTGGCGGACAAGAAGCTGGTACAAATGCTGCAGATTTTGATGACGATGATGGTGGTGGTTTGGCTTTGAATGCTCGATCTAGAGCATTACTGATGCAGAAACTGGATCGCACTGGTACAGCTTCGAGCATTACTAGTTCACTGGGTGTAGCTGGGCTTAATGGTTCAGCACCTATCCAACAACCCATTCCGCTACCTATCAATGTGCAGGCTGGTATACCAGCTCCTACGCTTCCTGGCCAAATTCTTCCTTCTCCACCTTCCGAACCTGTTGGGACTCCAAGCGATTGTTTGTTGTTGAAGAATTTATTCGATCCAGCGACTGAGACTGAACCAGATTTTGACTTGGACATTAAAGAAGATGTCGAGGAGGAATGTTCAAAGCTTGGTCGAGTCAGACATATCTATGTTGACAAGCATAGTGCTGGTCATGTGTATTTACGTTTCGACAACATAGATGCAGCGAAGAAGGCTCAAAATGGAATGCATATGAGATGGTTTGCTCGCAGATTGATTTCAGCTATCTACATGGTAATGCACGTCTTGTACAACATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_313131.p1 GENE.S_Transcript_313131~~S_Transcript_313131.p1 ORF type:5prime_partial len:195 (+),score=42.95,RBM39linker|PF15519.2|6.8e-24 S_Transcript_313131:1-585(+)
IKVSLVTEHVGGQEAGTNAADFDDDDGGGLALNARSRALLMQKLDRTGTASSITSSLGVAGLNGSAPIQQPIPLPINVQAGIPAPTLPGQILPSPPSEPVGTPSDCLLLKNLFDPATETEPDFDLDIKEDVEEECSKLGRVRHIYVDKHSAGHVYLRFDNIDAAKKAQNGMHMRWFARRLISAIYMVMHVLYNI*

Click here to download the sequence:
Link to NCBI Protein BLAST