Transcript Information: S_Transcript_314271.p3


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value2E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.16971376582704
Replicate 30.14186720064308
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.17433701212575
Replicate 30.1940157261932


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_314271.p3 GENE.S_Transcript_314271~~S_Transcript_314271.p3 ORF type:3prime_partial len:130 (+),score=19.22,gag_pre-integrs|PF13976.2|7.7e-14 S_Transcript_314271:749-1135(+)
ATGGGGATGATCAAATTGAAGTCGGTAATGGATGTGCAGGGAAGAGTGGTGCTGCAGGGGACGCTTGATCATGGACTGTACAAACTTACTGGTGGTGGTTGTTCCTTTAGATCTCAAAATCCTTCTTATGCACTAATTGGTGAACGAACATCCCTTCAAGGGTGGCACAATCGTCTTGGTCATCCTAGCTCAAAAATAGTTCGTAAGCTTGTGTCTAGTTTCAATCTCCCATTAGATTCTAATAAGAAATTTTCCATTTGTGGTCCATGTCAAATGAGAAAGAGTCATCGTCTTCATTTACCCACTTCTCAAGTTCGTTCAGAGTCCAGTTTTCATCTTATTTATTCTGATGTATGGGGACCTGCTCCTATTACTTCTGGAAATGGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_314271.p3 GENE.S_Transcript_314271~~S_Transcript_314271.p3 ORF type:3prime_partial len:130 (+),score=19.22,gag_pre-integrs|PF13976.2|7.7e-14 S_Transcript_314271:749-1135(+)
MGMIKLKSVMDVQGRVVLQGTLDHGLYKLTGGGCSFRSQNPSYALIGERTSLQGWHNRLGHPSSKIVRKLVSSFNLPLDSNKKFSICGPCQMRKSHRLHLPTSQVRSESSFHLIYSDVWGPAPITSGNG

Click here to download the sequence:
Link to NCBI Protein BLAST