Transcript Information: S_Transcript_314272.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0004
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.31309413217859
Replicate 20.064890557522102
Replicate 30
Condition 2: 8 Hour
Replicate 10.12544347245372
Replicate 20.13159910964545
Replicate 30.12538733885283
Condition 3: 24 Hour
Replicate 10.19274897197583
Replicate 20.1333165386844
Replicate 30.14836496708892


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_314272.p1 GENE.S_Transcript_314272~~S_Transcript_314272.p1 ORF type:3prime_partial len:340 (+),score=26.40,UBN2|PF14223.2|1.3e-16,gag_pre-integrs|PF13976.2|1.8e-10,UBN2_2|PF14227.2|1.9e-09,UBN2_3|PF14244.2|1.4e-06 S_Transcript_314272:134-1018(+)
ATGGAGAAGGGATCTCTTTCTATCCTCGAATATGTTGAGGCAAAAAGAGCTATAGCAGATACATTGGCTTCTACTTCCCATCCGGTGGCTGATGATGATCTTGTGAATTTTATTATCTATGGTCTCGGTGATGACTATAACACTTTTCGCACGTCCATTAATACCCGTGGTGGAGATTTTGTCACAATTGATGAACTGTTAGGCATGCTTTTACAAGAAGAAGAATGCTTTTGTCGGCAAATGTTGCCTTTAAATCTGGCCAAAAGTCATCAACATCACATGTTGGCAATTATGGTAGGAATTCATCATCCTATCATAATAAGTCTAAAAGCAATTACTTTAAAGGTCATTCTACCAACAACAGTGCATCAAATTCTTCCAAGAATGCATCCGGCAAGCCTAAGGTGGTATGTGAAATATGTTCCAAACCAGGCCACTCTGCCCTTCAGTGCTACAACCGGTTTAATCATACTTTTACTCCTGAAAAGGCATCCAAACTCTCAGCTCTCGTTGCATCTCCAAGCACAATTGTCGAAGGGAAGAGTGGTGCTGCAGGGGACGCTTGATCATGGACTGTACAAACTGACTGGTTGTGGTTGTTCCTTTAGATTTCGCAATCCTTCTTATGCATTAATTGGTAAACGAACGTCCCTTCAAGGATGGCACAATCGTCTTGGTCGTCCTAACTCAAAAATAGTTCGTAAGCTTGTGTCTAGTTTCAATCTCCCATTAGATTCTAATAAGAAATTTTCCATTTGTGGTCCATGTCAAATGAGAAAGAGTCATCGTCTTCATTTACCCACTTCTCAAGTTCGTTCAGAGTCCAGTTTTCATCTTATTTATTCTGATGTATGGGGACCTGCTCCTATTACTTCTGGAAATGGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_314272.p1 GENE.S_Transcript_314272~~S_Transcript_314272.p1 ORF type:3prime_partial len:340 (+),score=26.40,UBN2|PF14223.2|1.3e-16,gag_pre-integrs|PF13976.2|1.8e-10,UBN2_2|PF14227.2|1.9e-09,UBN2_3|PF14244.2|1.4e-06 S_Transcript_314272:134-1018(+)
MEKGSLSILEYVEAKRAIADTLASTSHPVADDDLVNFIIYGLGDDYNTFRTSINTRGGDFVTIDELLGMLLQEEECFCRQMLPLNLAKSHQHHMLAIMVGIHHPIIISLKAITLKVILPTTVHQILPRMHPASLRWYVKYVPNQATLPFSATTGLIILLLLKRHPNSQLSLHLQAQLSKGRVVLQGTLDHGLYKLTGCGCSFRFRNPSYALIGKRTSLQGWHNRLGRPNSKIVRKLVSSFNLPLDSNKKFSICGPCQMRKSHRLHLPTSQVRSESSFHLIYSDVWGPAPITSGNG

Click here to download the sequence:
Link to NCBI Protein BLAST