Transcript Information: S_Transcript_315956.p1


Annotated TAIR IDAT5G64400.2
Annotated Gene NameBEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25748922-25749947 | Forward length=162
E-Value0.0001
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.4412557911503
Replicate 30.36885472167201
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.14210565069988
Condition 3: 24 Hour
Replicate 10
Replicate 20.6043683087026
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_315956.p1 GENE.S_Transcript_315956~~S_Transcript_315956.p1 ORF type:internal len:150 (+),score=5.40 S_Transcript_315956:1-447(+)
CTTGAACCTTCTTCTCATCACCAGCCCAAGATGCCTCGCTCTCGGGGTGGGAGACCGGCCGCCCGGCCGATGGGCAGGAGTCCCTCTCCTGGCCCAAGCCCTTCGATGGGGCAGTCCCGCGGATACTCCTCCAGTGCCGCCCCTCAGCGGCCACAGCAGCAGGCCAGCCAGCCGGCGCCGACAGCAAGTCACCCACCTGCACAGAGCAGCGGAGGCGGCATGATGGGTGGTCTCATGGGCACCGTTGCTCAAGGCATGGCGCTCGGAACCGGCAGTGCTATTGCGCACCGTACAATCGACTCTGCCTGGGGGGCCATGACCGGCGGCGGCTCGGCGCCCGCGCAGCATGTGGAGCCAGCACAGGTGCAGGCAGGCGCGCAGCAGCTGCAGCAGGCAGAGCACCCATGCGCGGACGCGGCGAAGCAGTTTGCCGACTGCATGTCGCGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_315956.p1 GENE.S_Transcript_315956~~S_Transcript_315956.p1 ORF type:internal len:150 (+),score=5.40 S_Transcript_315956:1-447(+)
LEPSSHHQPKMPRSRGGRPAARPMGRSPSPGPSPSMGQSRGYSSSAAPQRPQQQASQPAPTASHPPAQSSGGGMMGGLMGTVAQGMALGTGSAIAHRTIDSAWGAMTGGGSAPAQHVEPAQVQAGAQQLQQAEHPCADAAKQFADCMSR

Click here to download the sequence:
Link to NCBI Protein BLAST