Transcript Information: S_Transcript_315958.p2


Annotated TAIR IDAT5G64400.2
Annotated Gene NameBEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25748922-25749947 | Forward length=162
E-Value7E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.51180936761119
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.9065524630539
Replicate 30.40355271048186


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_315958.p2 GENE.S_Transcript_315958~~S_Transcript_315958.p2 ORF type:3prime_partial len:125 (+),score=4.46 S_Transcript_315958:50-421(+)
ATGCCTCGCTCTCGAGGTGGCCGCCCGGCCGCCCGGCCCATGGGTGGACGATCTCCAAGTCCAGGCCCTGCAATGGGTGGGGGCCAGCAGCGTGGATATTCAACAAGCGCAGCTCCTCAGCGCCCGCAGCAGACCAGTCAGCCCGCGCCGGCAGCAAGCCACCCGCCAGCACAAAGCAGCGGCGGTGGGATGATGGGTGGCATCATGGGCACAGTTGCTCAAGGGATGGCGCTCGGCACCGGCAGCGCCATTGCACACCGCACGATCGACTCCGCCTGGGGCGCTATGACGGGTGGCGGCTCTGCGCCTGCGCAGCACGTCGAGCCGCAGCAGGTGCAGGCCGGCGCGCAGCAGCTGCAGCAGGCGCAGCAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_315958.p2 GENE.S_Transcript_315958~~S_Transcript_315958.p2 ORF type:3prime_partial len:125 (+),score=4.46 S_Transcript_315958:50-421(+)
MPRSRGGRPAARPMGGRSPSPGPAMGGGQQRGYSTSAAPQRPQQTSQPAPAASHPPAQSSGGGMMGGIMGTVAQGMALGTGSAIAHRTIDSAWGAMTGGGSAPAQHVEPQQVQAGAQQLQQAQH

Click here to download the sequence:
Link to NCBI Protein BLAST