Transcript Information: S_Transcript_317164.p1


Annotated TAIR IDAT3G25690.1
Annotated Gene NameHydroxyproline-rich glycoprotein family protein
Annotated Gene Symbol(s)CHUP1
Annotation TypeHomolog
Chromosome Positionchr3:9354061-9357757 | Forward length=1004
E-Value4E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0845423700857
Replicate 20.48413644797054
Replicate 30.40469953788465
Condition 2: 8 Hour
Replicate 10
Replicate 20.35065593479195
Replicate 30
Condition 3: 24 Hour
Replicate 10.068479258591204
Replicate 20.14209286254763
Replicate 30.79065969921994


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_317164.p1 GENE.S_Transcript_317164~~S_Transcript_317164.p1 ORF type:5prime_partial len:319 (+),score=63.32 S_Transcript_317164:2-958(+)
CCAAATCCGCCACCAAGACCTTCATGTGACAATTCAACTATTTGTAAGGAAGATCAAGCTTCTATAGCGGCACATCCCCCGCCACCTCCTCCTCCACCACCACCACCATCTCGGTTTTCAGTAGGCAATACTTGTTCTAGTGCTGTGCAGCGTGCACCACAGGTAGTGGAATTCTATCATTCACTAATGAAAAGGGATACGCGAAGAGACTCTACTGGTGGAGCAATCTGTGACAGCCCCAATGTGGCAAGTGTCCGAAGCAATATGATTGGTGAAATTGAGAATCGGTCTTCTTACTTGCTCGCTATAAAGGCAGATGTTGAGACTCAAGGAGAATTTGTGAATTCGTTGATTAGAGAAGTTAAAAAGGCTGTTTACCGAGATATAGAGGACGTTTTGGCATTCGTCAATTGGCTGGATGATGAGCTTTGCTTCCTGGTGGATGAAAGGGCAGTTTTGAAGCACTTTGATTGGCCAGAGAAGAAAGCTGACACATTAAGAGAAGCAGCATTTGGCTACAAAGATTTAAAGAAACTAGAGTCAGAAGTCACTAATTATCATGATGATCCTCGGCTGCCCTGTGACATTGCCCTGGAGAAAATGGTTTCTTTGTCTGAGAAGAACGAGCATACAATTTATAACCTTCTTCGAACAAGAGACTCATTGATTCGTAGCTGTAAGGAATTCAAAATTCCTACAGAATGGATGCTTGACAGTGGAATCATAAGCAAGGTAAAGCTCGGCTCAGTAAAATTGGCAAAGAAATACATGAACAGAGTGGCTACAGAACTCCAATCCCGGACATCTCTCGATAAAGATCCCGCAATGGACTACATGCTCCTTCAAGGAGTGAGGTTTGCCTTCAGAATCCATCAGTTTGCTGGAGGTTTTGATGCTGAAACGATGCAAGCATTCGAAGAACTTCGCAAATTTGCCCATGCTCTGAACGGAAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_317164.p1 GENE.S_Transcript_317164~~S_Transcript_317164.p1 ORF type:5prime_partial len:319 (+),score=63.32 S_Transcript_317164:2-958(+)
PNPPPRPSCDNSTICKEDQASIAAHPPPPPPPPPPPSRFSVGNTCSSAVQRAPQVVEFYHSLMKRDTRRDSTGGAICDSPNVASVRSNMIGEIENRSSYLLAIKADVETQGEFVNSLIREVKKAVYRDIEDVLAFVNWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYKDLKKLESEVTNYHDDPRLPCDIALEKMVSLSEKNEHTIYNLLRTRDSLIRSCKEFKIPTEWMLDSGIISKVKLGSVKLAKKYMNRVATELQSRTSLDKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMQAFEELRKFAHALNGR*

Click here to download the sequence:
Link to NCBI Protein BLAST