Transcript Information: S_Transcript_317888.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.42840368072844
Replicate 30
Condition 2: 8 Hour
Replicate 10.62112787331455
Replicate 21.7376193118234
Replicate 31.034749883737
Condition 3: 24 Hour
Replicate 10.2120862474815
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_317888.p1 GENE.S_Transcript_317888~~S_Transcript_317888.p1 ORF type:3prime_partial len:103 (+),score=17.34,UBN2_3|PF14244.2|1.4e-19 S_Transcript_317888:409-714(+)
ATGTCTGAGACTACAAATACAAATGCTGGAATGATTGATGCTGGAAATCCTCTGTATCTACATCCTAGTGATCATCCAGGGATAATGCGGGTTAGTTCACCTTTTGATGGTAATGGTTTCAATTCATGGAAAAGAGGTATGCTCATAGCTTTAACTGCTAAAAACAAGTTAGGTCTGGTCAATGGATCAGTTGTTAGACCTGCAGACACTTTTCCTAATATGTTGTTACTCTGGGAAAGATGTAATAATATGGTGATTTCTTGGTTGTTAAATGCTTTAGCAAGAGATATTGCAGACAGTGTTTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_317888.p1 GENE.S_Transcript_317888~~S_Transcript_317888.p1 ORF type:3prime_partial len:103 (+),score=17.34,UBN2_3|PF14244.2|1.4e-19 S_Transcript_317888:409-714(+)
MSETTNTNAGMIDAGNPLYLHPSDHPGIMRVSSPFDGNGFNSWKRGMLIALTAKNKLGLVNGSVVRPADTFPNMLLLWERCNNMVISWLLNALARDIADSVL

Click here to download the sequence:
Link to NCBI Protein BLAST