Transcript Information: S_Transcript_321820.p4


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.7273447106873
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.73753347163934
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.49810574893071
Replicate 30.55433064626629


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_321820.p4 GENE.S_Transcript_321820~~S_Transcript_321820.p4 ORF type:complete len:91 (+),score=6.18 S_Transcript_321820:2646-2918(+)
ATGGCTTCCAGCTCCTCCCAAATCTTTTTCATCTCAGTGCTTTGCAATATGTCTGCCATCTTGCCTTATCTCATATGTATCTCTATCAAGCTTATACTTCCTAGATCCATTACTTACTGTAAATTTACTCTCCAGATTCACCCATATGGATCTAGCAGTGTCCATGCACATCACAGATCTTCTTATGACCTCATGAACATTAGAGAGCTGCCAGGCTATGACCACATGATTACAAGTATCCCAGGCATCCTTTTTGACAGCATCTGTTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_321820.p4 GENE.S_Transcript_321820~~S_Transcript_321820.p4 ORF type:complete len:91 (+),score=6.18 S_Transcript_321820:2646-2918(+)
MASSSSQIFFISVLCNMSAILPYLICISIKLILPRSITYCKFTLQIHPYGSSSVHAHHRSSYDLMNIRELPGYDHMITSIPGILFDSICF*

Click here to download the sequence:
Link to NCBI Protein BLAST