Transcript Information: S_Transcript_322136.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.28616130360409
Replicate 20.59308574079341
Replicate 30.099154495073121
Condition 2: 8 Hour
Replicate 10.57326318056809
Replicate 20.36083626838269
Replicate 30.68760798725746
Condition 3: 24 Hour
Replicate 10.46978244065794
Replicate 20.2436968986704
Replicate 30.54240955709927


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_322136.p1 GENE.S_Transcript_322136~~S_Transcript_322136.p1 ORF type:5prime_partial len:186 (+),score=33.79,UBN2_3|PF14244.2|1.5e-34,Retrotrans_gag|PF03732.13|4.4e-09 S_Transcript_322136:3-560(+)
TCGAATTATAGATCATGGCGTCGAGCTATGGAAATAAATTTGGCGGCAAAACATAAACTAGGTTTCGTCAATGGAATAGTTACTCGACCTGATGATGATCCAGCTAAGGCAGATCAATGGGACACAGCAAACAGCACTTTAATCTCTTGGATTCTGAATTCTGTTTTTGATTCTATTCAAAGGTCAGTTTTATTCATTGATACTGCTGCTGGAATCTGGAAACAACTTGAAACTAGATTTGCTCTTAGTAATGGATCGCGCAAGTACAAGCTGAATAAAGATGTTTATGATCTCAGACAAGAAAATGTTGCTATAAGTGATTTTTACACTCAGATGAAAAGTCTATGGGAGGAATTGGAATCATTGACTGTTTTGCCTAAACTTACTGTTGTGACACCTGAAATGCAAGAATTTCTCAGAGCTCTGCATAAACATCAAGAGGAATTGAGACTTTTTCAATTTCTGAATGGACTTGATAGTGTTTACCAGAATCAGAGAAGCAATATTCTCATGATGATTCCTTTACCTTCTGTTGAAGAAGCTTGTTCTCTGATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_322136.p1 GENE.S_Transcript_322136~~S_Transcript_322136.p1 ORF type:5prime_partial len:186 (+),score=33.79,UBN2_3|PF14244.2|1.5e-34,Retrotrans_gag|PF03732.13|4.4e-09 S_Transcript_322136:3-560(+)
SNYRSWRRAMEINLAAKHKLGFVNGIVTRPDDDPAKADQWDTANSTLISWILNSVFDSIQRSVLFIDTAAGIWKQLETRFALSNGSRKYKLNKDVYDLRQENVAISDFYTQMKSLWEELESLTVLPKLTVVTPEMQEFLRALHKHQEELRLFQFLNGLDSVYQNQRSNILMMIPLPSVEEACSLI*

Click here to download the sequence:
Link to NCBI Protein BLAST