Transcript Information: S_Transcript_3222.p1


Annotated TAIR IDAT5G55310.1
Annotated Gene NameDNA topoisomerase 1 beta
Annotated Gene Symbol(s)TOP1BETA, TOP1
Annotation TypeOrtholog
Chromosome Positionchr5:22430389-22434590 | Reverse length=917
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.413526922969
Replicate 247.853188755159
Replicate 350.167358132371
Condition 2: 8 Hour
Replicate 150.599949358604
Replicate 251.193026401571
Replicate 348.281407721948
Condition 3: 24 Hour
Replicate 150.171722906064
Replicate 247.194336249796
Replicate 343.226375997364


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3222.p1 GENE.S_Transcript_3222~~S_Transcript_3222.p1 ORF type:complete len:947 (+),score=237.47,Topoisom_I_N|PF02919.11|1.3e+04,Topoisom_I_N|PF02919.11|3.1e-97,Topoisom_I|PF01028.16|2.5e+03,Topoisom_I|PF01028.16|1.6e+04,Topoisom_I|PF01028.16|6e-89,Topoisom_I|PF01028.16|4.1e+03,Topo_C_assoc|PF14370.2|4.8e+03,Topo_C_assoc|PF14370.2|6.5e-34 S_Transcript_3222:312-3152(+)
ATGGCGGTGGAAGCTTGTGTGAAAACAAAACTCATAGTTGAGGATAGTGACGATGATGAGCCCATAGTTTTTAGAAGAAGTAAACCGAATTCGTCGAGCTCGGAATTGAAGGGTTCTTCTTCATCATCATCAATTAGGTCTGATAAGCAGTCAGGGAGGCCAAGTTCTGATGTTAGGAACCCGAATTCGAATGCCCCAAAGGGGAAAATTGTTCAATCTTCGAAGCCCTCGTCTTCCAAGTCTTCCTTGGGAACTCAGAAATCGCCTCCCCCGTCCTCTAGACTCCAAAAATCACCCCCACCTGCACAAAAATCACCACAACCTGCACAAAAATCACAACAACCTACACAAAAATCACCAGTTTCATCGACCAGGCCGTCTCCTTCCCCGCCACCAATGCAAAAGTCGCCACCTTCATCAACCAGACCATCTCCTTCCCCACCATCATCAAGGGCTTCTCCTTCGATGAATGGGGCATCTTTGGCAAATCATCAGGCTAAGAAGGATAGTAGTGTTCTGGTTAAAGAGGAGAAACGTACGTCTGTTAAGGAGGAGTCAGAGGATTCGGAAGATGATATGCCGATTGGTAGGAGAATTCCAACTGGGTCACAGAAGGGAAATTCCAACAGCGAGGGTAAGCATTCGAATGGCGATGCTAATGGAGAGGATTCTGATGATGATAAGCCGCTCAGCGCAAGGATATCTTCTGGGGTGTCTAAAGGTAATTCCAGTGCAGCTGATAAGGAGAGGGCTTCTGGTGGAGCGTTGCAGACTCAGAAATCAAAGGGTCTTAGTGTGAAATCTGAATATCATTCAGATGACGAAAAGCCTTTATCATCAAAAATGCAAAATGGATCTATTAAGAGGGAACATCAAATTAAGAAGGTCCCTGTTACTTCCGCAAAACGGCCTTCAGCTGACTCCAGTTCTGGTCAGAATTCTGTTAAGAAGCCAAAGCTTTCAGAAGCTTCCACCTCAGCTAAAGCTAAGGTAAAAGCAGAGGTCAAGGATGATGATGATCACATCCCCATTGCTCAGCGGATGAATAAAAATGCATCAGGTAGTAAATCAGTGCCTGTGAAGAAGAATGTAGCCAAAGCTGCGTCTTCTAAATTAAAGAAAGTCAACAAGAAATCAAAGAAAATAATGAAGAAATCAAAGTACTCAAGATCGTCGAAAGAGCTACCTAACTCAGGTGATGGGCAGAAATGGACCACCTTAATTCACAGTGGAGTCATCTTCCCGCCTCCCTACAAACCTCATGGGGTTAAGATGCTTTATGATGGTAAACCAGTTGACCTGACTCCGGAGCAGGAAGAGGTTGCAACCATGTATGCGGTGATGCTTGAGACAGATTATGTAAAGAAGGAGAGATTTAATGAGAATTTTTTTAAAGCTTGGAAGGGACTTCTGGGGAAGAACCATGTTATTCAGGACCTTTCAAAGTGTGATTTTACGCCAATTTACGAATGGCATCAGAGGGAGAAGGAGAAAAAGAAGCAAATGAGCACTGAGGAGAAGAAGGCATTGAAAGAAGAGAAAATGAAACAAGAAGAGAAGTATATGTGGGCTATTGTTGACGGTGTCAAAGAAAAGGTGGGGAACTTCAGAGTTGAGCCTCCTGGATTATTCAGGGGTCGTGGCGAGCATCCAAAGATGGGAATGCTCAAAAAGCGTATTTATCCAAGTGACATTACAATAAATATAGGGAAGGGTGCTCCAATTCCAGAATGTCCAATCCCTGGTCAGAGCTGGAAAGAAGTGAGGCACGACAACACTGTCACATGGTTGGCGTTTTGGAATGACCCCATCAACTCAAAAGAGTTCAAGTATGTATTCCTGGCTGCTAGCAGTTCATTAAAGGGCCAAAGTGACAAAGAAAAGTATGAGAAAGCAAGGAAGTTGAAGGATTATATTCAAGGTATTAGAAAAGCATACACCAGGGACTTTACTAGTAAAGATAAGACCAAACAACAAATTGCTGTTGCGACGTATCTCATTGATAGACTTGCACTTAGGGCGGGTAATGAGAAGGATGAAGAAGAAGCAGACACTGTTGGTTGCTGTACATTGAAAGTAGAGAACGTAAAACCAATACCACCAAATATATTAGAGTTTGATTTCCTTGGTAAAGATTCAATCAAGTACTACAAGCAGTTTGAAGCTGAGCCTCTTGTGTACAAAGCTGTTCAACAATTCAGGGATGGGAAGAAAGGTAATGAATCTCTATTTAGTGAGTTGGACACTAGCAAACTGAATGCACATCTTAAAGAGCTCATGCCTGGTCTTACTGCAAAAGTCTTCCGTACGTTTAATGCATCTTATACATTGGATGACATGTTGGCTAAAGGGGCTGGCAGTGGAGAGGTGGTGGAGAAGATTGCCATTTATCAGCATGCGAACAAGGAGGTTGCAATCATTTGTAATCATCAACGTACGGTTTCTAAGTCTCATACAACTCAGATGGAGAGACTGCAAACAAGAATAGATGAAGCCAAGGCTGAGTTGAGTGACCTGGAGAAGGATTTGGCTCGGGCGAAGAAAGGAAAGCCTCCACTGAAGGATAGTGATGGCAAGCGGAAACGAAATTTGACCCCAGAAGCGATTGAGAAGAAGATAACATCGACAAAGACAAAGATAAATAAATATGAACGTGATATGCACAACAAAGAGGAACTGAAAGAAATTGCGCTGGGCACGTCAAAGATAAATTATCTTGACCCGAGGATCACAGTAGCATGGTGCAAAAGAAACGAAGTTCCCATTGAGAAGATCTTTAACAAGTCCTTGCTGGCGAAATTCTCATGGGCTATGGATGTGGAACCGAGCTTCAGATTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3222.p1 GENE.S_Transcript_3222~~S_Transcript_3222.p1 ORF type:complete len:947 (+),score=237.47,Topoisom_I_N|PF02919.11|1.3e+04,Topoisom_I_N|PF02919.11|3.1e-97,Topoisom_I|PF01028.16|2.5e+03,Topoisom_I|PF01028.16|1.6e+04,Topoisom_I|PF01028.16|6e-89,Topoisom_I|PF01028.16|4.1e+03,Topo_C_assoc|PF14370.2|4.8e+03,Topo_C_assoc|PF14370.2|6.5e-34 S_Transcript_3222:312-3152(+)
MAVEACVKTKLIVEDSDDDEPIVFRRSKPNSSSSELKGSSSSSSIRSDKQSGRPSSDVRNPNSNAPKGKIVQSSKPSSSKSSLGTQKSPPPSSRLQKSPPPAQKSPQPAQKSQQPTQKSPVSSTRPSPSPPPMQKSPPSSTRPSPSPPSSRASPSMNGASLANHQAKKDSSVLVKEEKRTSVKEESEDSEDDMPIGRRIPTGSQKGNSNSEGKHSNGDANGEDSDDDKPLSARISSGVSKGNSSAADKERASGGALQTQKSKGLSVKSEYHSDDEKPLSSKMQNGSIKREHQIKKVPVTSAKRPSADSSSGQNSVKKPKLSEASTSAKAKVKAEVKDDDDHIPIAQRMNKNASGSKSVPVKKNVAKAASSKLKKVNKKSKKIMKKSKYSRSSKELPNSGDGQKWTTLIHSGVIFPPPYKPHGVKMLYDGKPVDLTPEQEEVATMYAVMLETDYVKKERFNENFFKAWKGLLGKNHVIQDLSKCDFTPIYEWHQREKEKKKQMSTEEKKALKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGMLKKRIYPSDITINIGKGAPIPECPIPGQSWKEVRHDNTVTWLAFWNDPINSKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIQGIRKAYTRDFTSKDKTKQQIAVATYLIDRLALRAGNEKDEEEADTVGCCTLKVENVKPIPPNILEFDFLGKDSIKYYKQFEAEPLVYKAVQQFRDGKKGNESLFSELDTSKLNAHLKELMPGLTAKVFRTFNASYTLDDMLAKGAGSGEVVEKIAIYQHANKEVAIICNHQRTVSKSHTTQMERLQTRIDEAKAELSDLEKDLARAKKGKPPLKDSDGKRKRNLTPEAIEKKITSTKTKINKYERDMHNKEELKEIALGTSKINYLDPRITVAWCKRNEVPIEKIFNKSLLAKFSWAMDVEPSFRF*

Click here to download the sequence:
Link to NCBI Protein BLAST