Transcript Information: S_Transcript_3228.p1


Annotated TAIR IDAT5G66540.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26556653-26559310 | Reverse length=524
E-Value8.9E-151
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.814059313784
Replicate 215.67477992894
Replicate 315.840111526791
Condition 2: 8 Hour
Replicate 121.532936694915
Replicate 219.105885334657
Replicate 319.137585805932
Condition 3: 24 Hour
Replicate 113.553394866427
Replicate 214.778349154407
Replicate 314.544098598571


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3228.p1 GENE.S_Transcript_3228~~S_Transcript_3228.p1 ORF type:5prime_partial len:411 (+),score=183.08,Mpp10|PF04006.8|1e-89 S_Transcript_3228:3-1235(+)
GATGATAAAGATGATGATGATAATGATGATGATGATGATGATGATGGTAGTGATGATGATGATGATGAGGATGAGGATGAGGAGATAGAGGATGAAGATGGGGTACCAGAGGTGGAAGACCAGTTTTTGAAGGTTAAGGAATTGGAGAAGTTTTTAGTGAGAGAAGAGAAGAGAGAGTATGGTTCTGAGGATAATATTAATAATAATAAGAAAAGGAAGAAGAAAGCATGGAAGGCTGCTGACGAGGACGAAGAACAGGATGAGGAAGAGGAGGAGAGTGAGGGTCCTGAGGAAGATGATGAGATGCTTTTGTATGGAGATGATGATGAGAAGGAGGATGGAGCGGGTGCTGATATCAGATATGATGATTTCTTTGTTCCTGATAAGAAAAAGGCAAAACGGAACCAGAAACGTGCTGACAAATTAGATGATTCAGAGATGGAAGATGAAGATGACGAGCAGAAGGAGGAAAATCTATCTACTTATGAAAAGGAACGTCTAAAGATTCAAGCCAAGATAAAGGAGATGGAACAAGCAAACTTAGACCCTAAAGATTGGACCATGCAGGGGGAGGTAACTGCAGCCAAAAGGCCTAAAGATAGTGCATTGGAAGTCGATCTAGATTTTGAGCACAATATGAGACCACCCCCTGTTATCACAGACGAGGTGACTGAGTCTCTTGAAGAAATTATAAAAAAAAGAATACTTGAGGGGAATTTTGATGATGTTGAAAGGGCTCCGAAATTGCCATCTGCAGCACCCAGGGAAAGAAAGGAGTTGGACGAGAATAAGAGCAAGAAAGGCCTTGCTGAAATTTATGAGGAAGAATATTCTCAGCAAACTGGTCTTGCTTCTGCTCCTGTGTCATTTAACGATGAATTGAAAAAGGAGGCAAGCCAGCTCTTTAAAAGGTTATGCTTGAATTTGGATGCACTTTCCCATTTCCATTTTGCTCCAAAGCCGGTTGTGGAGGACATGTCTGTTCAAACAAATGTTCCAGCTTTAGCCATGGAAGAGATTGCACCAGTGGCAGTGTCAGATGCTGCTATGCTTGCTCCTGAGGAAGTTTTCGCTGGTAAAGGTGATGTCAAGGAGGAAACTGAGTTGACAAAGGAGGACAGGAAGAGGAGGAGAGCAAAGAAGAAAAGAAAATTGAAAGCTGTCAATGCGAAAAAATCAGTGAACCGAGCAACACCGAAACCATCACAAACTCTTGCTGAAGGCAAACCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3228.p1 GENE.S_Transcript_3228~~S_Transcript_3228.p1 ORF type:5prime_partial len:411 (+),score=183.08,Mpp10|PF04006.8|1e-89 S_Transcript_3228:3-1235(+)
DDKDDDDNDDDDDDDGSDDDDDEDEDEEIEDEDGVPEVEDQFLKVKELEKFLVREEKREYGSEDNINNNKKRKKKAWKAADEDEEQDEEEEESEGPEEDDEMLLYGDDDEKEDGAGADIRYDDFFVPDKKKAKRNQKRADKLDDSEMEDEDDEQKEENLSTYEKERLKIQAKIKEMEQANLDPKDWTMQGEVTAAKRPKDSALEVDLDFEHNMRPPPVITDEVTESLEEIIKKRILEGNFDDVERAPKLPSAAPRERKELDENKSKKGLAEIYEEEYSQQTGLASAPVSFNDELKKEASQLFKRLCLNLDALSHFHFAPKPVVEDMSVQTNVPALAMEEIAPVAVSDAAMLAPEEVFAGKGDVKEETELTKEDRKRRRAKKKRKLKAVNAKKSVNRATPKPSQTLAEGKP*

Click here to download the sequence:
Link to NCBI Protein BLAST