Transcript Information: S_Transcript_323839.p1


Annotated TAIR IDAT1G77400.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29085881-29086579 | Forward length=232
E-Value1.8E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.73925003431057
Replicate 20.85799737168113
Replicate 31.2295157389067
Condition 2: 8 Hour
Replicate 19.0040536894561
Replicate 29.81875579188
Replicate 311.486873431573
Condition 3: 24 Hour
Replicate 11.8204069575495
Replicate 20.88137045019129
Replicate 32.1018370337597


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_323839.p1 GENE.S_Transcript_323839~~S_Transcript_323839.p1 ORF type:complete len:180 (+),score=29.30 S_Transcript_323839:669-1208(+)
ATGGGAGAAGCAGATGGATCATTCAAGAAACCAGGAGCCATTCCATTCAAATGGGAAATCCGGCCTGGAGTTCCTAAAGCCGAGCAACATAATCATCGTCACCAACGTCAACCTTTAGAGGATCATCAATATTACTCTTTACCAAGCACCCCACAGAAGCTTACACCACCGCCGGCTGGGTCTTGCCTCACCCCACCACCCGACTTCCGAACCTCATCTGTCCGGTCTATGCCAAGCTTCCGTTTTGACCGACATAGGTATGAGCCCCCCCTCTTGAGCCGCCCTCAAGTGGCTTCGTCTGGTTGCTTCTTAGCACCTTGGTTCAGGCGTGAATGGGGAAAGAAAAGATCAGCTGCCAAGCCTAAATTAGAGGCTGAACCTGATTACACATCCGAGCTAGAGACTTTGGCCCGGTGGTCCATGTCAACCAGGAAGTCATCCCCCTTGACTCACTCGCCATCGTCTTCCTCTCTCTCGTCGTTCCGGTCATCCCCTCGGCCTGTTGGCGATGCTGAATGGGCTGGGTATGGTCTGTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_323839.p1 GENE.S_Transcript_323839~~S_Transcript_323839.p1 ORF type:complete len:180 (+),score=29.30 S_Transcript_323839:669-1208(+)
MGEADGSFKKPGAIPFKWEIRPGVPKAEQHNHRHQRQPLEDHQYYSLPSTPQKLTPPPAGSCLTPPPDFRTSSVRSMPSFRFDRHRYEPPLLSRPQVASSGCFLAPWFRREWGKKRSAAKPKLEAEPDYTSELETLARWSMSTRKSSPLTHSPSSSSLSSFRSSPRPVGDAEWAGYGLF*

Click here to download the sequence:
Link to NCBI Protein BLAST