Transcript Information: S_Transcript_324337.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value4E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.36571777595914
Replicate 20.2098996892364
Replicate 30.17545943419916
Condition 2: 8 Hour
Replicate 10.22542695895489
Replicate 20.16554222037853
Replicate 30.40558695231466
Condition 3: 24 Hour
Replicate 10.23091843013313
Replicate 20.33540524531592
Replicate 30.61322095276709


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_324337.p1 GENE.S_Transcript_324337~~S_Transcript_324337.p1 ORF type:5prime_partial len:946 (+),score=127.39,RVT_1|PF00078.23|9.1e-38,RVT_3|PF13456.2|7.8e+03,RVT_3|PF13456.2|2.9e-18,zf-RVT|PF13966.2|4.5e-18,zf-RVT|PF13966.2|1.6e+04 S_Transcript_324337:1-2838(+)
CGCCCTTTCAACGAGAGCGACATTAAAGCGGCGTTGTTCAACATGCATCCCCACAAGGCACCTCGCCCTGATGGATTCCAAGCCTTCTTCTTTCAGAAGAACTGGGAGCTGGTTGGCCCTAATTTCTGCGATGCTGCCTTAAAAGTACTACGTGGTCAGTCTCTCCCTGAGGCTCTTAATGATACTTTTATTGCCCTAATCCCAAAGGTGGAAGCTCCTTGTCATGCCTCTCAGTTCCGCCCTATAAGCCTGTGCAATGTGCTTTACAAGACAATAACCAAAGTTCTAGTTGATAGGCTCAAGCCAATCCTACCAACTATGATTTCTCCCACTCAAGGTGCCTTTGTCCCTGGGAGACGGATCACAGACAATATCATTATTGTCCAGGAGGTGCTGCACACGATGAGAAATAAGAGAAACGGGGCTGGATTAATGGCCATCAAAATTGATCTCGCTAAAGCTTATGACCGACTGCGCTGGGATTTTATTCGCGATACGCTCATGGAGATGAAAGTGCCACTGCTGTTGATTGAGACTATTATGCTTTGTGTGACTTCATCTAACATGAGCATATTATGGAATGGAGAGACTACCCAACAATTCAAACCTACACGGGGGATAAGACAAGGTGATCCATTATCCCCGTACTTATTTGTAATGTGCATGGAACGGCTGCATCATCTAATAGAGGATGCGATGTCATGCAATCTATGGAAGCCGGTTCAGTGCAACAAGGATGGTCCTTACCTCTCCAACCTCTTTTTCGCTGATGACGTAGTGTTATTTGCAGAGGCTTCAGCGGATCAAGCTCTGATAATTAAGCATTGCTTAGACAGATTTTGTGATGCTTCGGGGGAGCTTGTTTCCTTCTTTAAATCCAAAGTGCATTTCTCCAAAAATGTCCCTTATGATCGGATGCTTGAAATTTGCGACATCCTAGAAATTCAACAGACGGAGGATTTGGGGTTCTACCTTGGTGTTCCGACCATTAATGGCAGAGTCACTAAAGCAATGTTCCACTACATTCTTGACAGAATGGAGAAGCGACTTCATGGATGGAAGACTCATTGCCTTTCCTTGGCCGGGCGAGCTACTCTTGTTAAGTCAGTTCTCTCCTCCATGGCTACTTATGCCATGCAGACGTCTAAAGTACCAAGGTCCTTATGTGATGATATGGATCGACAGATGCGTAGATTTCTATGGGGTGGCTCCCAGGACCAACGAAAAATTCATCTGGTTTCCTGGGACACAATTCAAGGATCTAGAAAAGAAGGGGGGCTTGGGATTCGTTCCATGCGCCAAACAAATGCAGCATTCATGACTAAGCTAGGATGGAGGCTGCTAGCTGAGCCACATGCACTTTGGTCACAAGTTGTTCGGTCTAAATATTGTCAGGGCAGGTGTGATCTTGATATGTTCTCTCGTAGGACAAATGCTTCTAATACTTGGCAAGGCATATATGAGAATGCAGAATTTATCAAGAAGGGAGTAAGGGTTGACATTGGAGATGGAAAGCGTACTCTGTTCTGGGATCATAGATGGGCACTCTCCACCCCTTTGATATCTCATGCATTACGAGACATTCCCCTAGATGAACAAGACAGCACTGTGGAGGAGTATTGGGGTCCACAAGGAGATTGGCGGTGGGACAAATTTGTTGAATTTCTCCCACCAGAAATTCCCAAGTGCCTTATACCTTTCTCTATTTCACCAGGGGTGCCTGATTCATTATACTGGGATGGTACTATGGATGGCAAGTTTTCTATAAAGTCTGCTTTGAAGATAATTAAAGGAACTCAAGATGTACAGATCAACAAAGCTTGGGATATTGTATGGAGGACCCCGGTGTCTCAGCGAATTCGTATGTTCTTGTGGCTTGTTTTTCATAATCGGATCCTCACTAATGCTAGCAGAGTAGCGCGACGGCTAGCTGAAGACCCGAAATGTGGACGGTGTGGGGCAGCAGAGGAGAACATTGATCATATCTTTAGGAGGTGCCCCCAGGCTGTGACTACCTGGGCATCCCTTTCAGCTGGCCCCATTGATGTCAGTTTCTGGTCACAACCCCTAGAGGCTTGGCTACTTGAGCACCTAGACGTGAATGGCCCAAAACATGCACAAGATGGACCTCTGCGATTTGCTGTTACCCTGTGGTGGCTTTGGCGATGGAGAAATAGTCACTTATTTGATAGAAAGGGTGACATACCCCAGGATTCGACGGTGTTTCTCATGGCTAGATTCCAGGAAATGAAAAGAGCCATGTTTGTTGATGAACTTCTCCATGGAAAATCTACACCAAGAAGGCATGAGACACTCATAAGCTGGAAGGCCCCACCTGAAGGATGGATTATGTTGAACACCGATGGGGCTAGTAAAGGTAATCCTGGAGATGCTGGAGGTGGGGGTATTCTTCGTGACTCACGGGGATTCTTCGTTGCTGCTTTTGCTGAAAATTATGGTCACTGTACTGTTTCACGTGCCGAGACTTTGGCTCTGTGGAGGGGTCTGTGTATGGCTAGACAAAGGAAGATCAGGAAGCTGATGGTTCGTATTGACTCGCAAGTAGTGATAAAGCTAACTAATGGACCTGCTACTCATCGAGGGCCAATGCAGCATATCCTAAAACAATGCAGGGAGTTGATGCTACAAGAGGATTGGGTGGTTGAGCTTCACCACTGCTTTCGGGAAGCAAACACTGCAGCTGACTGGCTTGCAAATACTGGGGTGAGACAAAGACAGCGAATTCAATGGCTCTCATCCCCCCCTCCCCGCGAGCTGAACATGATCCTCTTGGAAGATGCAAGGGGTGTGACCAGGCCTCGCATAGTGCCTGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_324337.p1 GENE.S_Transcript_324337~~S_Transcript_324337.p1 ORF type:5prime_partial len:946 (+),score=127.39,RVT_1|PF00078.23|9.1e-38,RVT_3|PF13456.2|7.8e+03,RVT_3|PF13456.2|2.9e-18,zf-RVT|PF13966.2|4.5e-18,zf-RVT|PF13966.2|1.6e+04 S_Transcript_324337:1-2838(+)
RPFNESDIKAALFNMHPHKAPRPDGFQAFFFQKNWELVGPNFCDAALKVLRGQSLPEALNDTFIALIPKVEAPCHASQFRPISLCNVLYKTITKVLVDRLKPILPTMISPTQGAFVPGRRITDNIIIVQEVLHTMRNKRNGAGLMAIKIDLAKAYDRLRWDFIRDTLMEMKVPLLLIETIMLCVTSSNMSILWNGETTQQFKPTRGIRQGDPLSPYLFVMCMERLHHLIEDAMSCNLWKPVQCNKDGPYLSNLFFADDVVLFAEASADQALIIKHCLDRFCDASGELVSFFKSKVHFSKNVPYDRMLEICDILEIQQTEDLGFYLGVPTINGRVTKAMFHYILDRMEKRLHGWKTHCLSLAGRATLVKSVLSSMATYAMQTSKVPRSLCDDMDRQMRRFLWGGSQDQRKIHLVSWDTIQGSRKEGGLGIRSMRQTNAAFMTKLGWRLLAEPHALWSQVVRSKYCQGRCDLDMFSRRTNASNTWQGIYENAEFIKKGVRVDIGDGKRTLFWDHRWALSTPLISHALRDIPLDEQDSTVEEYWGPQGDWRWDKFVEFLPPEIPKCLIPFSISPGVPDSLYWDGTMDGKFSIKSALKIIKGTQDVQINKAWDIVWRTPVSQRIRMFLWLVFHNRILTNASRVARRLAEDPKCGRCGAAEENIDHIFRRCPQAVTTWASLSAGPIDVSFWSQPLEAWLLEHLDVNGPKHAQDGPLRFAVTLWWLWRWRNSHLFDRKGDIPQDSTVFLMARFQEMKRAMFVDELLHGKSTPRRHETLISWKAPPEGWIMLNTDGASKGNPGDAGGGGILRDSRGFFVAAFAENYGHCTVSRAETLALWRGLCMARQRKIRKLMVRIDSQVVIKLTNGPATHRGPMQHILKQCRELMLQEDWVVELHHCFREANTAADWLANTGVRQRQRIQWLSSPPPRELNMILLEDARGVTRPRIVPE*

Click here to download the sequence:
Link to NCBI Protein BLAST