Transcript Information: S_Transcript_324427.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.07961511971433
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_324427.p2 GENE.S_Transcript_324427~~S_Transcript_324427.p2 ORF type:complete len:281 (-),score=55.29,UBN2_3|PF14244.2|1.7e-18,UBN2_3|PF14244.2|6.5e+02,UBN2_3|PF14244.2|3.7e+03,Retrotrans_gag|PF03732.13|7.7e-09,Retrotrans_gag|PF03732.13|5.4e+03,UBN2|PF14223.2|3.9e-05,UBN2|PF14223.2|2.4e+02,UBN2|PF14223.2|5.1e+03 S_Transcript_324427:1853-2695(-)
ATGATCACTTCTTGGATTCTTAATGTTCTTTCTCGTGATATTGCTAAAAGTGTGATCTACGCTGATTCTGCTCAAGAAATTTGGAATGAACTTGATGACAGATATGGTCAATCTAATGGACCTAAGCTCTATCAACTTCAGAAAGATCTATGCTCCATGTCACAAGAAGGTATCGATATAGCCAGTTATTTCACTAAATTCAAGTCAATTTGTGATGAATTGACAGCTCTTTCAACTATTCCTGCTTGTACATGTGGTTCTGCTGCTCAATTTCTAAAAATTCAACAGAGACTTGTTCAGTTCTTAATGGGACTCAATGATGATTATAATGTTGCTCGTGGTAATATTTTGATGATGAAGCCTCTGCCATCTATTTCTACTACTTATGGATTGTTGATATCTGATGAAAAACAAAAGGAAATTCATGCTAATTCACATATTCTTCCTGAGTCATCTGCATTGGCTGTTAAATCTGGACACAAGTTTCAATCATCTTCATATAATACTCCCAATTACAATCATCAATCTGGCTTCAGAAAGTCTATCATATGCAATCATTGCAAGAAACCTGGTCACACAGCTAGCAAGTGCTACAGACTAATTGGCTTTCCCAAAGACTTCAAATTCACTAAGAATTCAAGAATGGCTGCTAATGTGTATTCTGAAGACTCTGAATCAATTCCTCTTTCTGAGAATTTTCCTCCTGATCAATCTCAAGAATCTCAGCATCACACTCTCACAACTGAACAATATCAACAGTTCTTGTCTCTTATCAATAATACATCTCTTCATTCTCCTACTGCTGTTACTGCTAACACAGTGATTATGACAGCAACATACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_324427.p2 GENE.S_Transcript_324427~~S_Transcript_324427.p2 ORF type:complete len:281 (-),score=55.29,UBN2_3|PF14244.2|1.7e-18,UBN2_3|PF14244.2|6.5e+02,UBN2_3|PF14244.2|3.7e+03,Retrotrans_gag|PF03732.13|7.7e-09,Retrotrans_gag|PF03732.13|5.4e+03,UBN2|PF14223.2|3.9e-05,UBN2|PF14223.2|2.4e+02,UBN2|PF14223.2|5.1e+03 S_Transcript_324427:1853-2695(-)
MITSWILNVLSRDIAKSVIYADSAQEIWNELDDRYGQSNGPKLYQLQKDLCSMSQEGIDIASYFTKFKSICDELTALSTIPACTCGSAAQFLKIQQRLVQFLMGLNDDYNVARGNILMMKPLPSISTTYGLLISDEKQKEIHANSHILPESSALAVKSGHKFQSSSYNTPNYNHQSGFRKSIICNHCKKPGHTASKCYRLIGFPKDFKFTKNSRMAANVYSEDSESIPLSENFPPDQSQESQHHTLTTEQYQQFLSLINNTSLHSPTAVTANTVIMTATY*

Click here to download the sequence:
Link to NCBI Protein BLAST