Transcript Information: S_Transcript_324431.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.10710092018211
Replicate 30.17905569013204
Condition 2: 8 Hour
Replicate 10.20704262443818
Replicate 20
Replicate 30.1034749883737
Condition 3: 24 Hour
Replicate 10.10604312374075
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_324431.p1 GENE.S_Transcript_324431~~S_Transcript_324431.p1 ORF type:3prime_partial len:206 (-),score=39.06,UBN2_3|PF14244.2|8.4e-19,Retrotrans_gag|PF03732.13|3.6e-09,UBN2|PF14223.2|2.3e-05,UBN2|PF14223.2|1.4e+02 S_Transcript_324431:2-616(-)
ATGATCACTTCTTGGATTCTTAATGTTCTTTCTCGTGATATTGCTAAAAGTGTGATCTACGCTGATTCTGCTCAAGAAATTTGGAATGAACTTGATGACAGATATGGTCAATCTAATGGACCTAAGCTCTATCAACTTCAGAAAGATCTATGCTCCATGTCACAAGAAGGTATCGATATAGCCAGTTATTTCACTAAATTCAAGTCAATTTGTGATGAATTGACAGCTCTTTCAACTATTCCTGCTTGTACATGTGGTTCTGCTGCTCAATTTCTAAAAATTCAACAGAGACTTGTTCAGTTCTTAATGGGACTCAATGATGATTATAATGTTGCTCGTGGTAATATTTTGATGATGAAGCCTCTGCCATCTATTTCTACTACTTATGGATTGTTGATATCTGATGAAAAACAAAAGGAAATTCATGCTAATTCACATATTCTTCCTGAGTCATCTGCTATGGTTGTTAAGTCTGGTAATAAGCATCATTCATCTTCATATGGTACATCCAATTACAATCAACCAACTGGATTCAGAAAACCTATCATATGCAATCACTGCAAGAAGCCTGGACATATAGCAAGTAAATGTTACAGGTTGATTGGCTTTCCTAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_324431.p1 GENE.S_Transcript_324431~~S_Transcript_324431.p1 ORF type:3prime_partial len:206 (-),score=39.06,UBN2_3|PF14244.2|8.4e-19,Retrotrans_gag|PF03732.13|3.6e-09,UBN2|PF14223.2|2.3e-05,UBN2|PF14223.2|1.4e+02 S_Transcript_324431:2-616(-)
MITSWILNVLSRDIAKSVIYADSAQEIWNELDDRYGQSNGPKLYQLQKDLCSMSQEGIDIASYFTKFKSICDELTALSTIPACTCGSAAQFLKIQQRLVQFLMGLNDDYNVARGNILMMKPLPSISTTYGLLISDEKQKEIHANSHILPESSAMVVKSGNKHHSSSYGTSNYNQPTGFRKPIICNHCKKPGHIASKCYRLIGFPK

Click here to download the sequence:
Link to NCBI Protein BLAST