Transcript Information: S_Transcript_326703.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value2.2E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.49579302376438
Replicate 30.62166526124496
Condition 2: 8 Hour
Replicate 12.1565001444292
Replicate 22.010952686717
Replicate 31.6765273397176
Condition 3: 24 Hour
Replicate 10.2454481291078
Replicate 20.7639487048207
Replicate 30.28339375736085


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_326703.p1 GENE.S_Transcript_326703~~S_Transcript_326703.p1 ORF type:5prime_partial len:89 (+),score=11.11,AAA_11|PF13086.2|5.3e-08 S_Transcript_326703:2-268(+)
GGGAAAACCGTCACTTCTGCTGCAATTGTGTATCACATGGGTAAACAAGGGCAAGGACAGGTGTTGGTATGTGCACCAAGTAATGTTGCTGTGGATCAACTAGTTGAAAAAATAAGTGCGACTGGCTTGAAGGTAATCCGTGCTTTTTATCTCTCAATTTGGCCAAAGAAAGACAATGTTTGTAGGTATATTGCTTGCAAATATGTCACTGATGTCTCATCATATAATATTACCAGACACGATATCTTCCCTGATGTGAACTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_326703.p1 GENE.S_Transcript_326703~~S_Transcript_326703.p1 ORF type:5prime_partial len:89 (+),score=11.11,AAA_11|PF13086.2|5.3e-08 S_Transcript_326703:2-268(+)
GKTVTSAAIVYHMGKQGQGQVLVCAPSNVAVDQLVEKISATGLKVIRAFYLSIWPKKDNVCRYIACKYVTDVSSYNITRHDIFPDVNY*

Click here to download the sequence:
Link to NCBI Protein BLAST