Transcript Information: S_Transcript_327920.p1


Annotated TAIR IDAT3G53920.1
Annotated Gene NameRNApolymerase sigma-subunit C
Annotated Gene Symbol(s)SIGC, SIG3
Annotation TypeOrtholog
Chromosome Positionchr3:19961041-19963820 | Reverse length=571
E-Value3.7E-125
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 147.84003793467
Replicate 255.222636957946
Replicate 356.206433778592
Condition 2: 8 Hour
Replicate 136.938622513605
Replicate 237.685911696682
Replicate 334.574812335461
Condition 3: 24 Hour
Replicate 169.825609728863
Replicate 266.57494650552
Replicate 368.910228463978


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_327920.p1 GENE.S_Transcript_327920~~S_Transcript_327920.p1 ORF type:complete len:336 (-),score=62.02,Sigma70_r4|PF04545.12|5.4e+03,Sigma70_r4|PF04545.12|2.5e-16,Sigma70_r2|PF04542.10|3.5e-13,Sigma70_r2|PF04542.10|6.3e+03,Sigma70_r3|PF04539.12|1.1e+04,Sigma70_r3|PF04539.12|3.5e+03,Sigma70_r3|PF04539.12|6.4e-07 S_Transcript_327920:322-1329(-)
ATGCAAATGGCCAGCAAGAATTATGCCTCTATGCCGGAAAGTTCTGTTGAAGGTTCTATGGAGCCTTTGGTTTCTTCTGCAGTAAAGAAGAGTAAGACCGTGGGTAGAAGAGTGATGGTTGCCAATAATGAGGCAGAAATGTCTACGGGAATTAAGGTAGTTGCAAATTTGGAAAGGGTGAAATCAAAAATGGAAAAGGAAACGGGGGGAGCAGTGAGTTTAAGTACTTGGGCTGAAGCAGCTGGCATTGATGACAAGGTTCTGCAGCACTACCTGCACTTTGGGTGGTACTGCAGGGATAAAATCCTCAAAAGTGGCCGCTCCTTAGTGGTGTACCTTGCAAGAAATTACCGGGGACTAGGAGTATCATATGAAGACTTAATTCAGGCAGGAAACATAGGGCTATTGCAAGGCGCTGAAAGGTTTGATGGCACAAGAGGGTACCAATTCTCAACATATGTTCAGTACTGGATTAGAAAAGCGATGTTTCAATTGGTATCTCGGCATGGAAGAGAAATTAAAGTTCCTTTGACATTGAGCACTGCTATAAACCGGGTACAGAGGGCACGAAAAGCCCTTAAAATAACTCATGGGAAACACCCAGATGATGTTGATCTGGCAAAGTTCACTGGTCTTTCATTGCAGAAAGTAAAATCTGCAAACAAATGCTTGAGAGTTGTGGGCTCAACTAATCAGAAAATTGGAGATTGCATAAACATAAAATTCATGGAATGCACGCCAGACATATCAGTAGAGATGCCTGAAAAAATAGTGTTGAGGGATCACAGGCGAAAAGACATCAATAAGCTCCTGAAAGAGCTGGATCCAAAAGAGAGGCAGGTTCTGGTTCTAAGGTATGGATTTGAAGGACATTGCATGTCACTACATGAGATTGGGAGGATATTTGATGTAAGCAAGGAATGGATAAGAAGAATGGAGAAGAGAGCTCTGACAAAGCTGAAGGGTTTCGACAACCGGGAAAGTTTACGACATTACTTGGATCTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_327920.p1 GENE.S_Transcript_327920~~S_Transcript_327920.p1 ORF type:complete len:336 (-),score=62.02,Sigma70_r4|PF04545.12|5.4e+03,Sigma70_r4|PF04545.12|2.5e-16,Sigma70_r2|PF04542.10|3.5e-13,Sigma70_r2|PF04542.10|6.3e+03,Sigma70_r3|PF04539.12|1.1e+04,Sigma70_r3|PF04539.12|3.5e+03,Sigma70_r3|PF04539.12|6.4e-07 S_Transcript_327920:322-1329(-)
MQMASKNYASMPESSVEGSMEPLVSSAVKKSKTVGRRVMVANNEAEMSTGIKVVANLERVKSKMEKETGGAVSLSTWAEAAGIDDKVLQHYLHFGWYCRDKILKSGRSLVVYLARNYRGLGVSYEDLIQAGNIGLLQGAERFDGTRGYQFSTYVQYWIRKAMFQLVSRHGREIKVPLTLSTAINRVQRARKALKITHGKHPDDVDLAKFTGLSLQKVKSANKCLRVVGSTNQKIGDCINIKFMECTPDISVEMPEKIVLRDHRRKDINKLLKELDPKERQVLVLRYGFEGHCMSLHEIGRIFDVSKEWIRRMEKRALTKLKGFDNRESLRHYLDL*

Click here to download the sequence:
Link to NCBI Protein BLAST