Transcript Information: S_Transcript_33077.p1


Annotated TAIR IDAT3G57660.1
Annotated Gene Namenuclear RNA polymerase A1
Annotated Gene Symbol(s)NRPA1
Annotation TypeOrtholog
Chromosome Positionchr3:21353746-21362814 | Forward length=1670
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.726943874596
Replicate 24.3784001796053
Replicate 34.6853115595917
Condition 2: 8 Hour
Replicate 18.5991897619403
Replicate 27.2736059616845
Replicate 37.8153107686103
Condition 3: 24 Hour
Replicate 13.3205452737286
Replicate 22.9506017886167
Replicate 33.585399697279


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_33077.p1 GENE.S_Transcript_33077~~S_Transcript_33077.p1 ORF type:3prime_partial len:1421 (+),score=302.70,RNA_pol_Rpb1_5|PF04998.13|1.7e+03,RNA_pol_Rpb1_5|PF04998.13|7.8e-65,RNA_pol_Rpb1_2|PF00623.16|3.7e-58,RNA_pol_Rpb1_1|PF04997.8|4.7e-32,RNA_pol_Rpb1_1|PF04997.8|7.5e+03,RNA_pol_Rpb1_3|PF04983.14|1.9e-30,RNA_pol_Rpb1_4|PF05000.13|1.5e+04,RNA_pol_Rpb1_4|PF05000.13|1.1e+04,RNA_pol_Rpb1_4|PF05000.13|9.6e-20 S_Transcript_33077:124-4383(+)
ATGGCGCAGACAGCTGAGCTGGCGACGGAGACGGTGGAGGCGGTTCGGTTTGGGATTATGACGGACGAGGAAGTGAGGAAGCTGAGCTTTCGGCAAATTACAAACCCTAATATCTTGGATACTCTTGGAAGGCCTGAGGCTGGTGGTCTTTATGATCCTGCATTAGGTCCACTGGATGATATCCAGCCTTGTAAATCATGTGGTCAACGCTCTTTGTATTGCCCTGGACATTGTGGTCATATAAATCTTGTTTCAATAGTCTACCACCCTTTGCTCTTCAACATGCTTTATAGTCTTCTACAGAATACCTGCTTCTATTGCTTCCATTTTAGGTCAGAGCCGGCTGAGGTGAAGCTTTGTCTCTCTAAATTGAATAGCATAATGAAGGGCGACATTGTTGGAGCCAGAAGTTTAGGAATAAATAATTGTCATTTAGAGGGACTTGGTGAATCGAAGCATGTGGATCCACGGGACTGGACTTCTTTTCAGCTTAGTGAAGCATTCTCTGTGTTGAATGGTTTCTTGAAGAAAAAAAATAAGAAATGTAGCATCTGTGATCAGAGGAATCCTGCCATCTCGAAACCTACCTTTGGTTGGATCCATATGAAAGGCTTGAGCGCTAATGATGTAAAAGCAAATCTTATCAAAAGTTGCAAGTTGGATGGTCTAGTTACTAATGGAGATGACGATGATGATAATGCTGCATCAGATGTTGAAAATCCCACATGCGAAAATGGTGGTAATGCAGATGGTTCATCTGCGTTTTCACCTACTACACGAGAATCAAAGAAGCAACAGATGAATAGGATGAAATCTGAGTATTTGAAGCAGACAAAAGCACGAGATCTCTTGCCTTCAGAAGTCAAACGGATATTAGAGATGTTATGGAAAAATGAGGCTGATATATGCTCCTTTGTATGTGATATTCAGCAACATCATGGATATGAATCTAAGAATAATGCAGGTTACTTGATGTTCTTTATAAAGACTGTTCTTGTGCCTCCAACCAAGTTCCGTCCCCCTTCTAAAGGAGCTGAATCAGTTATGGAGCATCCTCAAACTGTTCTATTGAACAATGTTCTGAATGCTAATATATCTCTTGGAAATGTGTATGAACATCACGCTGAGCATACAAATATTATTCGTAGCTGGCGGTATGTTCAACAGTGTATAAATGTTTTGTTTGATAGCAAGAGTGCAGCAGGCCAACGAGATGTAGCTACTGGAATATGTCAATTACTGGAGAAAAAGGAGGGCATGTTTCGGCAGAAGATGATGGGGAAGCGAGTGAATTTTGCTTGTCGTTCTGTGATATCACCAGATCCTTATCTCGCTGTCAATGAGATTGGGATTCCCCCTGTTTTTGCGTTAAAGCTAACATACCCTGAGAGAGTGACTCCTTGGAACGTGACAAGTTTAAGGGATGCCATTGTTAATGGCCCTGACATTCACCCTGGAGCTACACACTATGTTGATAAACAATCTACTATAAGATTGCCGGCAAACAAAAAATTGCGTATTTCTGCCTCGAGAAAGTTACCTTCTTCAAGAGGTGTTGCGACACAATCTGGGAAGAGTTTCAACTATGAATATGAAGGGAAAGTTGTACACCGTCATTTGCGCAATGGGGACATTGTGCTGGTCAATCGCCAGCCTACACTTCACAAACCAAGTATAATCGCACTTAAGGTTCGTGTCTTGCCTGGAGAGAAAACAATCCGCTTCCATTATGCAAACTGCGATTCCTTCAATGCTGATTTTGATGGGGATGAAATAAATGTTCATTTTCCACAAGACGACATATCACGAGCTGAAGCATACAACATTGTAAATGCTGATAATCAGTATATTGTTCCAACACGTGGTGATCCAAAAAGAGCCTTAATTCAGGATCACATTGTAAGCGCCGTACTCCTTACGAAGAGAGATACGTTTCTTACTTGGGATGAATTCAATGAGCTCCTTTATGCATCTGGTGTATGTTCCTTTGGTGCACCTTCTTTCAACACTAAATCCGGCAAAAAATTATCTGTGGTGGATTCAGAAGATATTATTCTTGCCCATCCTCCAGCTATTATTAGACCACAGAGACTTTGGACCGGAAAGCAGGTCATAACTGCCATTCTAAATCACATAACCAGAGGGTGTTTGCCGTTTACTGTTAAGAAACGTGGTAAAATTGCCCGGGAGTATTTTGGGAAGGATGAATCTAAGAAGACCAATGCTGACTGTTCTAAGAAATTTGATAAAATTTCTGAAAAGAAATTGAAGAGGAATCAAGCCTCTAAGAAGACAGATGATAAGATTACAGAGAGGAGATTGCAGGGTAGTCCTGTTCACAGCATTGATGAAGATGTTGTATTTGTATACAAGAATGAACTTGTCCAAGGGGTAATTGACAAGGAGCAATTCGGCAAGTATGGTTTGGTTCACACTGTGCAGGAGATGTATGGGGCAAACGCTGCAGGAAGCTTACTTTCTGTCCTAAGTCGAGTATTGACTGCTTTTTTGCAGATGCACGGCTTTACTTGTGGAGTTGATGATCTTCTTCTAGTGCAACCATATGACAAGCAGAGAAAAGAACTGCTTGAAGTTTGCCTGAATTCTGGCGAGGATGTTCATAAGCAGTTTATTGGGCGTGAGAAAGACCTTGTAGGCTCTGCTGAGATGCAGATTGAAATAGAAAAAGCAATACGCCGCAATGGAGATTCTGCAATAGCACTTTTGGATGGGATGATGCGGAGCAAACTCAATTCACTGAACTCAGCCGTCACTAAGCTTTTCCCAGAAGGGCTAAGTAAACCATTCCGGAGGAACTGCCTTTCACTTATGACACTCTCTGGAGCGAAAGGTGGCACATTCAACTTCCAGCAAATCTCTCTCCTTCTGGGTCAGCAAGAGTTGGAAGGGAAGCGAGTGCCTCGGATGGTCTCCGGAAAAACATTGCCATGCTTCCCTGCTTGGGACAGTTCAGCTCGAGCTGGAGGATTCATCTGTGATCGTTATCTTTCTGGGCTTCGCCCTCAGGAATTCTATTTCCATTGCATGGCTGGTCGTGAAGGATTAGTCGATACCGCTGTCAAAACATCTCGCAGTGGATATTTGCAAAGATGCTTGATAAAAAACCTGGAGTGTCTCAAAGTTCATTATGATTATACGGTTCGTGATGCGGATGGATCCATTGTCCAGTTCCGCTATGGGGAAGATGGCGTTGATGTCCATCAGAAAAACTATTTGCAAGAATTTGAAGCACTAGCAGTGAATCAACAGCTGATCATGAGCAGAAATCCTCTTAGTCAACTGCACGATGCATGCCTATCTGAATACATTGAAGAAGACAATGATTTGCCGAATGAATATGCCAAAAAAGCTCAGAACTTCTTAAAAAATGATATGAAAGTTAACATTTGTGGATTTACACACCGAAAGGACCGTTTAAACTTTGTGAAGCTGGTGAAGAACAAATACTTCATGAGTCTGGCACAGCCTGGAGAACCTGTCGGTGTTATTGCTGGGCAGTCTGTTGGAGAGCCGTCCACTCAAATGACATTAAATACATTTCATCATGCTGGTCGTGGAGAAATGAATGTGACGCTGGGAATTCCGCGTCTGCAGGAGATTTTAATGACTGCATCAGTTTCTATCAAGACTCCAACTATGACATGCCCTTTGCTGAAGTGCAAGTCAAAGGATGATGCGGAACGCCTTGCTGCAAGGTTGAACAGGATCACGGTTGCTGACTTAATAGAGAAGATAGAAGTTAGTATTGTGCCATTTACCATCAAGGAACGTGAGATCTGCAGTGTTTACAAGCTTAGAATAAAGCTGTATGCACCGGAGCTTTATCCTCCTCATACTGAAATAACATTACAAAACTGCTATGAAACCCTGGAAGATAAATTTTTGCGGGAACTAGAAGACACGATACAGACTCATATGAGTTTGCTTTCAAGAATTAGCGGTATCTCTTCTGTATCCTTGTCAAATACAACAGATGAGGCTGAGGAGGATGGATCTGGTAAGAAGTCACCGACAGGTGAAGATGATGACGGTGATGATGAAGACGGTGACAATGAAGCTGCAGAAGATTTAGGTTCAGAAGCTTCAAGAAGCAAAAAAGCTATAGATGAGATGGATTATGAGGAGAACACTGAAGAGGCAGAAGAAGAAGAAGAAAAAGAAGAAGATGATGAAGAAGAAGAAAATGAAGAAGAGAGGCGTGCAGCTGAAACTGAAGGTTCAGTGGAGCTGGCGGAGGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_33077.p1 GENE.S_Transcript_33077~~S_Transcript_33077.p1 ORF type:3prime_partial len:1421 (+),score=302.70,RNA_pol_Rpb1_5|PF04998.13|1.7e+03,RNA_pol_Rpb1_5|PF04998.13|7.8e-65,RNA_pol_Rpb1_2|PF00623.16|3.7e-58,RNA_pol_Rpb1_1|PF04997.8|4.7e-32,RNA_pol_Rpb1_1|PF04997.8|7.5e+03,RNA_pol_Rpb1_3|PF04983.14|1.9e-30,RNA_pol_Rpb1_4|PF05000.13|1.5e+04,RNA_pol_Rpb1_4|PF05000.13|1.1e+04,RNA_pol_Rpb1_4|PF05000.13|9.6e-20 S_Transcript_33077:124-4383(+)
MAQTAELATETVEAVRFGIMTDEEVRKLSFRQITNPNILDTLGRPEAGGLYDPALGPLDDIQPCKSCGQRSLYCPGHCGHINLVSIVYHPLLFNMLYSLLQNTCFYCFHFRSEPAEVKLCLSKLNSIMKGDIVGARSLGINNCHLEGLGESKHVDPRDWTSFQLSEAFSVLNGFLKKKNKKCSICDQRNPAISKPTFGWIHMKGLSANDVKANLIKSCKLDGLVTNGDDDDDNAASDVENPTCENGGNADGSSAFSPTTRESKKQQMNRMKSEYLKQTKARDLLPSEVKRILEMLWKNEADICSFVCDIQQHHGYESKNNAGYLMFFIKTVLVPPTKFRPPSKGAESVMEHPQTVLLNNVLNANISLGNVYEHHAEHTNIIRSWRYVQQCINVLFDSKSAAGQRDVATGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPVFALKLTYPERVTPWNVTSLRDAIVNGPDIHPGATHYVDKQSTIRLPANKKLRISASRKLPSSRGVATQSGKSFNYEYEGKVVHRHLRNGDIVLVNRQPTLHKPSIIALKVRVLPGEKTIRFHYANCDSFNADFDGDEINVHFPQDDISRAEAYNIVNADNQYIVPTRGDPKRALIQDHIVSAVLLTKRDTFLTWDEFNELLYASGVCSFGAPSFNTKSGKKLSVVDSEDIILAHPPAIIRPQRLWTGKQVITAILNHITRGCLPFTVKKRGKIAREYFGKDESKKTNADCSKKFDKISEKKLKRNQASKKTDDKITERRLQGSPVHSIDEDVVFVYKNELVQGVIDKEQFGKYGLVHTVQEMYGANAAGSLLSVLSRVLTAFLQMHGFTCGVDDLLLVQPYDKQRKELLEVCLNSGEDVHKQFIGREKDLVGSAEMQIEIEKAIRRNGDSAIALLDGMMRSKLNSLNSAVTKLFPEGLSKPFRRNCLSLMTLSGAKGGTFNFQQISLLLGQQELEGKRVPRMVSGKTLPCFPAWDSSARAGGFICDRYLSGLRPQEFYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVHYDYTVRDADGSIVQFRYGEDGVDVHQKNYLQEFEALAVNQQLIMSRNPLSQLHDACLSEYIEEDNDLPNEYAKKAQNFLKNDMKVNICGFTHRKDRLNFVKLVKNKYFMSLAQPGEPVGVIAGQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASVSIKTPTMTCPLLKCKSKDDAERLAARLNRITVADLIEKIEVSIVPFTIKEREICSVYKLRIKLYAPELYPPHTEITLQNCYETLEDKFLRELEDTIQTHMSLLSRISGISSVSLSNTTDEAEEDGSGKKSPTGEDDDGDDEDGDNEAAEDLGSEASRSKKAIDEMDYEENTEEAEEEEEKEEDDEEEENEEERRAAETEGSVELAED

Click here to download the sequence:
Link to NCBI Protein BLAST