Transcript Information: S_Transcript_33080.p1


Annotated TAIR IDAT3G57660.1
Annotated Gene Namenuclear RNA polymerase A1
Annotated Gene Symbol(s)NRPA1
Annotation TypeOrtholog
Chromosome Positionchr3:21353746-21362814 | Forward length=1670
E-Value2.7e-316
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7553256133842
Replicate 22.0419815867062
Replicate 32.2170523164328
Condition 2: 8 Hour
Replicate 13.0626890349074
Replicate 23.4509766518727
Replicate 33.9910523175284
Condition 3: 24 Hour
Replicate 13.0211009082737
Replicate 22.3869333468706
Replicate 32.9783477967743


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_33080.p1 GENE.S_Transcript_33080~~S_Transcript_33080.p1 ORF type:complete len:940 (+),score=179.08,RNA_pol_Rpb1_2|PF00623.16|9.7e+03,RNA_pol_Rpb1_2|PF00623.16|2e-58,RNA_pol_Rpb1_1|PF04997.8|1.8e-32,RNA_pol_Rpb1_1|PF04997.8|3.3e+03,RNA_pol_Rpb1_3|PF04983.14|9.4e-31 S_Transcript_33080:124-2943(+)
ATGGCGCAGACAGCTGAGCTGGCGACGGAGACGGTGGAGGCGGTTCGGTTTGGGATTATGACGGACGAGGAAGTGAGGAAGCTGAGCTTTCGGCAAATTACAAACCCTAATATCTTGGATACTCTTGGAAGGCCTGAGGCTGGTGGTCTTTATGATCCTGCATTAGGTCCACTGGATGATATCCAGCCTTGTAAATCATGTGGTCAACGCTCTTTGTATTGCCCTGGACATTGTGGTCATATAAATCTTGTTTCAATAGTCTACCACCCTTTGCTCTTCAACATGCTTTATAGTCTTCTACAGAATACCTGCTTCTATTGCTTCCATTTTAGGTCAGAGCCGGCTGAGGTGAAGCTTTGTCTCTCTAAATTGAATAGCATAATGAAGGGCGACATTGTTGGAGCCAGAAGTTTAGGAATAAATAATTGTCATTTAGAGGGACTTGGTGAATCGAAGCATGTGGATCCACGGGACTGGACTTCTTTTCAGCTTAGTGAAGCATTCTCTGTGTTGAATGGTTTCTTGAAGAAAAAAAATAAGAAATGTAGCATCTGTGATCAGAGGAATCCTGCCATCTCGAAACCTACCTTTGGTTGGATCCATATGAAAGGCTTGAGCGCTAATGATGTAAAAGCAAATCTTATCAAAAGTTGCAAGTTGGATGGTCTAGTTACTAATGGAGATGACGATGATGATAATGCTGCATCAGATGTTGAAAATCCCACATGCGAAAATGGTGGTAATGCAGATGGTTCATCTGCGTTTTCACCTACTACACGAGAATCAAAGAAGCAACAGATGAATAGGATGAAATCTGAGTATTTGAAGCAGACAAAAGCACGAGATCTCTTGCCTTCAGAAGTCAAACGGATATTAGAGATGTTATGGAAAAATGAGGCTGATATATGCTCCTTTGTATGTGATATTCAGCAACATCATGGATATGAATCTAAGAATAATGCAGGTTACTTGATGTTCTTTATAAAGACTGTTCTTGTGCCTCCAACCAAGTTCCGTCCCCCTTCTAAAGGAGCTGAATCAGTTATGGAGCATCCTCAAACTGTTCTATTGAACAATGTTCTGAATGCTAATATATCTCTTGGAAATGTGTATGAACATCACGCTGAGCATACAAATATTATTCGTAGCTGGCGGTATGTTCAACAGTGTATAAATGTTTTGTTTGATAGCAAGAGTGCAGCAGGCCAACGAGATGTAGCTACTGGAATATGTCAATTACTGGAGAAAAAGGAGGGCATGTTTCGGCAGAAGATGATGGGGAAGCGAGTGAATTTTGCTTGTCGTTCTGTGATATCACCAGATCCTTATCTCGCTGTCAATGAGATTGGGATTCCCCCTGTTTTTGCGTTAAAGCTAACATACCCTGAGAGAGTGACTCCTTGGAACGTGACAAGTTTAAGGGATGCCATTGTTAATGGCCCTGACATTCACCCTGGAGCTACACACTATGTTGATAAACAATCTACTATAAGATTGCCGGCAAACAAAAAATTGCGTATTTCTGCCTCGAGAAAGTTACCTTCTTCAAGAGGTGTTGCGACACAATCTGGGAAGAGTTTCAACTATGAATATGAAGGGAAAGTTGTACACCGTCATTTGCGCAATGGGGACATTGTGCTGGTCAATCGCCAGCCTACACTTCACAAACCAAGTATAATCGCACTTAAGGTTCGTGTCTTGCCTGGAGAGAAAACAATCCGCTTCCATTATGCAAACTGCGATTCCTTCAATGCTGATTTTGATGGGGATGAAATAAATGTTCATTTTCCACAAGACGACATATCACGAGCTGAAGCATACAACATTGTAAATGCTGATAATCAGTATATTGTTCCAACACGTGGTGATCCAAAAAGAGCCTTAATTCAGGATCACATTGTAAGCGCCGTACTCCTTACGAAGAGAGATACGTTTCTTACTTGGGATGAATTCAATGAGCTCCTTTATGCATCTGGTGTATGTTCCTTTGGTGCACCTTCTTTCAACACTAAATCCGGCAAAAAATTATCTGTGGTGGATTCAGAAGATATTATTCTTGCCCATCCTCCAGCTATTATTAGACCACAGAGACTTTGGACCGGAAAGCAGGTCATAACTGCCATTCTAAATCACATAACCAGAGGGTGTTTGCCGTTTACTGTTAAGAAACGTGGTAAAATTGCCCGGGAGTATTTTGGGAAGGATGAATCTAAGAAGACCAATGCTGACTGTTCTAAGAAATTTGATAAAATTTCTGAAAAGAAATTGAAGAGGAATCAAGCCTCTAAGAAGACAGATGATAAGATTACAGAGAGGAGATTGCAGGGTAGTCCTGTTCACAGCATTGATGAAGATGTTGTATTTGTATACAAGAATGAACTTGTCCAAGGGGTAATTGACAAGGAGCAATTCGGCAAGTATGGTTTGGTTCACACTGTGCAGGAGATGTATGGGGCAAACGCTGCAGGAAGCTTACTTTCTGTCCTAAGTCGAGTATTGACTGCTTTTTTGCAGATGCACGGCTTTACTTGTGGAGTTGATGATCTTCTTCTAGTGCAACCATATGACAAGCAGAGAAAAGAACTGCTTGAAGTTTGCTTGAATTCTGGCGAGGATGTTTATAAGCAATTTATTGGGCGTGAGAAAGACCCCCGTAGATTTCTAGTAGATTGGTGTAGGGTCGGTGGTGGCTGGTTTGGCGTTGGTGTGCTTACAATTGGGGGAACATTGAAGGCAGGCAGGGCCTGCTGGTGGGTTGCTGTGCAGAGTGCAGATGGGGGGTTCTGTCCACGTGCCACTTCTGCTCCTAGTCCTAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_33080.p1 GENE.S_Transcript_33080~~S_Transcript_33080.p1 ORF type:complete len:940 (+),score=179.08,RNA_pol_Rpb1_2|PF00623.16|9.7e+03,RNA_pol_Rpb1_2|PF00623.16|2e-58,RNA_pol_Rpb1_1|PF04997.8|1.8e-32,RNA_pol_Rpb1_1|PF04997.8|3.3e+03,RNA_pol_Rpb1_3|PF04983.14|9.4e-31 S_Transcript_33080:124-2943(+)
MAQTAELATETVEAVRFGIMTDEEVRKLSFRQITNPNILDTLGRPEAGGLYDPALGPLDDIQPCKSCGQRSLYCPGHCGHINLVSIVYHPLLFNMLYSLLQNTCFYCFHFRSEPAEVKLCLSKLNSIMKGDIVGARSLGINNCHLEGLGESKHVDPRDWTSFQLSEAFSVLNGFLKKKNKKCSICDQRNPAISKPTFGWIHMKGLSANDVKANLIKSCKLDGLVTNGDDDDDNAASDVENPTCENGGNADGSSAFSPTTRESKKQQMNRMKSEYLKQTKARDLLPSEVKRILEMLWKNEADICSFVCDIQQHHGYESKNNAGYLMFFIKTVLVPPTKFRPPSKGAESVMEHPQTVLLNNVLNANISLGNVYEHHAEHTNIIRSWRYVQQCINVLFDSKSAAGQRDVATGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPVFALKLTYPERVTPWNVTSLRDAIVNGPDIHPGATHYVDKQSTIRLPANKKLRISASRKLPSSRGVATQSGKSFNYEYEGKVVHRHLRNGDIVLVNRQPTLHKPSIIALKVRVLPGEKTIRFHYANCDSFNADFDGDEINVHFPQDDISRAEAYNIVNADNQYIVPTRGDPKRALIQDHIVSAVLLTKRDTFLTWDEFNELLYASGVCSFGAPSFNTKSGKKLSVVDSEDIILAHPPAIIRPQRLWTGKQVITAILNHITRGCLPFTVKKRGKIAREYFGKDESKKTNADCSKKFDKISEKKLKRNQASKKTDDKITERRLQGSPVHSIDEDVVFVYKNELVQGVIDKEQFGKYGLVHTVQEMYGANAAGSLLSVLSRVLTAFLQMHGFTCGVDDLLLVQPYDKQRKELLEVCLNSGEDVYKQFIGREKDPRRFLVDWCRVGGGWFGVGVLTIGGTLKAGRACWWVAVQSADGGFCPRATSAPSPR*

Click here to download the sequence:
Link to NCBI Protein BLAST