Transcript Information: S_Transcript_3330.p1


Annotated TAIR IDAT4G19610.1
Annotated Gene Namenucleotide binding;nucleic acid binding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:10677482-10681623 | Forward length=816
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.370754890009
Replicate 214.4540232304
Replicate 314.591329383565
Condition 2: 8 Hour
Replicate 118.780594336568
Replicate 217.459652757018
Replicate 315.948730845255
Condition 3: 24 Hour
Replicate 114.337334033206
Replicate 213.198019151859
Replicate 315.139246224073


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3330.p1 GENE.S_Transcript_3330~~S_Transcript_3330.p1 ORF type:complete len:838 (+),score=191.83,RRM_1|PF00076.18|5.6e-11,RRM_1|PF00076.18|9.5e-20,RRM_1|PF00076.18|7.6e-06,RRM_1|PF00076.18|1.6e-08,RRM_1|PF00076.18|1e-17,RRM_6|PF14259.2|8e-07,RRM_6|PF14259.2|1.6e-14,RRM_6|PF14259.2|6.9e-07,RRM_6|PF14259.2|8.7e-05,RRM_6|PF14259.2|1.3e-08,RRM_5|PF13893.2|0.59,RRM_5|PF13893.2|6.4e+03,RRM_5|PF13893.2|1e-08,RRM_5|PF13893.2|0.0044,RRM_5|PF13893.2|45,RRM_5|PF13893.2|1.2e-09,RRM_occluded|PF16842.1|45,RRM_occluded|PF16842.1|0.05,RRM_occluded|PF16842.1|76,RRM_occluded|PF16842.1|1.3e+03,RRM_occluded|PF16842.1|1.4e+03 S_Transcript_3330:424-2937(+)
ATGGCTGTCTCTAATGATAATAATAATATAAGCAAGAAAAGCTCTCGAATTTGTGTTAAAAATTTGCCACAACGTCTAACGCTGGATGATCTTAAGCAATTCTTTTCTCAGAAGGGTGAGCTCACTGATGCTAAGCTCATTCTTAACAAGGATGGGAAAAGTAGAGTTGCTTACATTGGGTACCGCACAGAGCAAGAAGCTGAAGAGGCTATCAAATATTTCAACCGGTCTTATTTGAAATCGTCAAGCATCACTTGTGAGTTTAGTTTAAGTTATGGGGATCCAAACATTCCTCGTCCTTGGGGCCAACGTTCTAAGGAGGGCAATAAACTGGCTGGACGGAAAAGGTCATTTGCTGGCAGTGGAGCTAACATAGGCAAGAATACTCCACTTAAATGTAATGAATCCGATGATCCCAAGTTTCGAGAGTTTTACCATGTTGTGCAGCCACGAAGCAAAACAAAATTTTGGGCAGATGATGTAATGCAACCCACCTTCAATCAAGATTGCCAAGTCAATGAGACTGTAAGGAAAAAACAAAAGAAGTCTCACTTTAATCAAGATTGCCAAGTCAATGAGACTGTAAGAAAAAAACCAAAGAAGTGCATAAGTGAGTTCAGTTTTAATAAAACTGTTCCAGAGGAGAATTGGATGGATGATGGAAGATCAGCACAGTTGCAGAACACTGCTCGTGACTATATTCTCACAGATCAAAAGTATTTTGAAAGTAAAATTCGAATGGACTGGTCAGATTCAGAAATTGATATTGATGAAAATGGGATTGATTTCAGTCAGGATCATGGTGGTTTGTGTTATGAAGAAACAAACTCTGGGAACCTGTGTTGTAGCTCGAAACATGGAAATAAAGTGCTTCAATCCAGTCGTCTCTATGTCCACAATATTGACTATGCTACAACTGAGGATGAATTGGCAGGGTTCTTCAGTGAATTTGGAGATGTCAAAAAGGTTCATCTAGTTACTGATAAAGAGACTAAACGGTCCAAAGGTTTTGGCTATGTTTTCTATAGCACTCCAGAAGAAGCTGCGAGAGCTTTGGAAAAATTGGACCATCCTATTTTCCAAGGGAGAGTATTGCATGTAGTTCCTGCAGAAACAAGACATGATTTGGAAAAATCTGTTTCTGAAGGCAAAGGCAAAACATACAAGCAGCAGAGGGTGGAACAGAGAAAGACATTAGAATCCAGTGGCCATACTCAAGCATGGAACAGTTTGCATATGCGTTCTGACACTGTCGTTGAATACATTGCTAGGAAATACGGGGTCAGTAAAAGCAACTTATTAAGTTGTGAAGCTGATGATCTTGCTGTTCGGAAAAAACAAAAGAAGTCTCACTTTAATCAAGATTGCCAAGTCAATGATTTTGCTCTTTGGGAAACTCAAATCATAGCAGATACTTTGAAAGCTCTAACAAATGCGGGAGTTAATGTGGCTTCCTTGGAGGCATTCAGTTCTGGAAAATCTGAAGGTGGAAAGAGAAGCAACCTTATATTACTGGTCAAGAATTTGCCTTTCAGCTCGAGCAAAGTTGATCTCCTCAAGATGTTTGGTAGATTTGGGAGTATTGAAAAAATTATCCTTCCCCCAACAAAAACATTAGCCTTGGTTTTCTTTCTTGAGCCAGCTGAAGCTCGTGTAGCATTTGATTGCTTGCGCTACAAGCGTTACAGAGATGCTTTGTTGTATTTGGAGTGGGCTCCGAGCACAATTCTTAGTCAAGATCCAACACCTAATGGTGATTCAAAGAGTACTATGGTAGTTGGGAGCCAAGAAGTTACAAAGGGATCACTAGAGCAAATTATGCAGATATCCGAAGCTGAAATGGATCCTGAAATAGCTGAGTCACGGACAGTTTATGTCAAAAACCTCAATTTCAAGACAACGGATGAGAGTTTTGGGAAACACATCCGGGAGAACATGAAAGAAGGGAAGCTTTTGAGCAGCAGGATTGTGAAGCACTTGGAAATGGGAAAGTATTTTTCAAGTGGCTATGCATTTGTGGAATTTGATTCTATGGAGACAGCAAATTATATTTGCAAGGCTTTGCAGGGAACTGTTTTGGATGGGCATGCCTTAAGCTTGCAACTTCATCATCCCAAGGAGGATAAGAGAGTTCTTAAGAAGGCTGAGGATGATCGAAGTTCAACAAAATTGAAGGTTGGAAATGTAGCATTTGAGGCAACGAAGAAGGATCTGAGACAACTCTTTAGTCCGTTTGGTCAGGTTAAAAGCTTGAGGCTTCCCAAGGGGTTGGAAAAACACAGAGGCTTTGCATTCGTTGAATATGTCACCAAACAAGAAGCACACAACGCTCTCAAAGCTCTTTCGAGTACCCATTTATATGGGCGGCGCTTGGTGTTAGAAAGGGCAAAAGAAGGTGAGACTTTGGAAGAACAAAGAGCAAGAACAGCTGCTCAGTTTGCTGGTGAAGGGAGCAGGATCGAGAAGCCAATGGAAGTTACAAGAGAAAGAAAGATTAGATCTCTTCTAGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3330.p1 GENE.S_Transcript_3330~~S_Transcript_3330.p1 ORF type:complete len:838 (+),score=191.83,RRM_1|PF00076.18|5.6e-11,RRM_1|PF00076.18|9.5e-20,RRM_1|PF00076.18|7.6e-06,RRM_1|PF00076.18|1.6e-08,RRM_1|PF00076.18|1e-17,RRM_6|PF14259.2|8e-07,RRM_6|PF14259.2|1.6e-14,RRM_6|PF14259.2|6.9e-07,RRM_6|PF14259.2|8.7e-05,RRM_6|PF14259.2|1.3e-08,RRM_5|PF13893.2|0.59,RRM_5|PF13893.2|6.4e+03,RRM_5|PF13893.2|1e-08,RRM_5|PF13893.2|0.0044,RRM_5|PF13893.2|45,RRM_5|PF13893.2|1.2e-09,RRM_occluded|PF16842.1|45,RRM_occluded|PF16842.1|0.05,RRM_occluded|PF16842.1|76,RRM_occluded|PF16842.1|1.3e+03,RRM_occluded|PF16842.1|1.4e+03 S_Transcript_3330:424-2937(+)
MAVSNDNNNISKKSSRICVKNLPQRLTLDDLKQFFSQKGELTDAKLILNKDGKSRVAYIGYRTEQEAEEAIKYFNRSYLKSSSITCEFSLSYGDPNIPRPWGQRSKEGNKLAGRKRSFAGSGANIGKNTPLKCNESDDPKFREFYHVVQPRSKTKFWADDVMQPTFNQDCQVNETVRKKQKKSHFNQDCQVNETVRKKPKKCISEFSFNKTVPEENWMDDGRSAQLQNTARDYILTDQKYFESKIRMDWSDSEIDIDENGIDFSQDHGGLCYEETNSGNLCCSSKHGNKVLQSSRLYVHNIDYATTEDELAGFFSEFGDVKKVHLVTDKETKRSKGFGYVFYSTPEEAARALEKLDHPIFQGRVLHVVPAETRHDLEKSVSEGKGKTYKQQRVEQRKTLESSGHTQAWNSLHMRSDTVVEYIARKYGVSKSNLLSCEADDLAVRKKQKKSHFNQDCQVNDFALWETQIIADTLKALTNAGVNVASLEAFSSGKSEGGKRSNLILLVKNLPFSSSKVDLLKMFGRFGSIEKIILPPTKTLALVFFLEPAEARVAFDCLRYKRYRDALLYLEWAPSTILSQDPTPNGDSKSTMVVGSQEVTKGSLEQIMQISEAEMDPEIAESRTVYVKNLNFKTTDESFGKHIRENMKEGKLLSSRIVKHLEMGKYFSSGYAFVEFDSMETANYICKALQGTVLDGHALSLQLHHPKEDKRVLKKAEDDRSSTKLKVGNVAFEATKKDLRQLFSPFGQVKSLRLPKGLEKHRGFAFVEYVTKQEAHNALKALSSTHLYGRRLVLERAKEGETLEEQRARTAAQFAGEGSRIEKPMEVTRERKIRSLLV*

Click here to download the sequence:
Link to NCBI Protein BLAST