Transcript Information: S_Transcript_3337.p1


Annotated TAIR IDAT4G19610.1
Annotated Gene Namenucleotide binding;nucleic acid binding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:10677482-10681623 | Forward length=816
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47750600302357
Replicate 20.23751806939908
Replicate 30.66182067285648
Condition 2: 8 Hour
Replicate 10.43365028156849
Replicate 20.88309928841026
Replicate 30.71392791021469
Condition 3: 24 Hour
Replicate 10.70551657206464
Replicate 21.1657223657691
Replicate 30.39220882448147


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_3337.p1 GENE.S_Transcript_3337~~S_Transcript_3337.p1 ORF type:complete len:836 (+),score=167.51,RRM_1|PF00076.18|5.6e-11,RRM_1|PF00076.18|9.5e-20,RRM_1|PF00076.18|7.6e-06,RRM_1|PF00076.18|9.7e-08,RRM_1|PF00076.18|1.2e-18,RRM_6|PF14259.2|8e-07,RRM_6|PF14259.2|1.6e-14,RRM_6|PF14259.2|6.9e-07,RRM_6|PF14259.2|5.6e-07,RRM_6|PF14259.2|1.9e-12,RRM_5|PF13893.2|0.58,RRM_5|PF13893.2|6.4e+03,RRM_5|PF13893.2|1e-08,RRM_5|PF13893.2|0.0044,RRM_5|PF13893.2|64,RRM_5|PF13893.2|1.7e-10,RRM_occluded|PF16842.1|44,RRM_occluded|PF16842.1|0.05,RRM_occluded|PF16842.1|76,RRM_occluded|PF16842.1|8.6e+02,RRM_occluded|PF16842.1|3e+02,Nup35_RRM_2|PF14605.2|2.7,Nup35_RRM_2|PF14605.2|2.7,Nup35_RRM_2|PF14605.2|7.9e+02,Nup35_RRM_2|PF14605.2|49 S_Transcript_3337:423-2930(+)
ATGGCTGTCTCTAATGATAATAATAATATAAGCAAGAAAAGCTCTCGAATTTGTGTTAAAAATTTGCCACAACGTCTAACGCTGGATGATCTTAAGCAATTCTTTTCTCAGAAGGGTGAGCTCACTGATGCTAAGCTCATTCTTAACAAGGATGGGAAAAGTAGAGTTGCTTACATTGGGTACCGCACAGAGCAAGAAGCTGAAGAGGCTATCAAATATTTCAACCGGTCTTATTTGAAATCGTCAAGCATCACTTGTGAGTTTAGTTTAAGTTATGGGGATCCAAACATTCCTCGTCCTTGGGGCCAACGTTCTAAGGAGGGCAATAAACTGGCTGGACGGAAAAGGTCATTTGCTGGCAGTGGAGCTAACATAGGCAAGAATACTCCACTTAAATGTAATGAATCCGATGATCCCAAGTTTCGAGAGTTTTACCATGTTGTGCAGCCACGAAGCAAAACAAAATTTTGGGCAGATGATGTAATGCAACCCACCTTCAATCAAGATTGCCAAGTCAATGAGACTGTAAGGAAAAAACAAAAGAAGTCTCACTTTAATCAAGATTGCCAAGTCAATGAGACTGTAAGAAAAAAACCAAAGAAGTGCATAAGTGAGTTCAGTTTTAATAAAACTGTTCCAGAGGAGAATTGGATGGATGATGGAAGATCAGCACAGTTGCAGAACACTGCTCGTGACTATATTCTCACAGATCAAAAGTATTTTGAAAGTAAAATTCGAATGGACTGGTCAGATTCAGAAATTGATATTGATGAAAATGGGATTGATTTCAGTCAGGATCATGGTGGTTTGTGTTATGAAGAAACAAACTCTGGGAACCTGTGTTGTAGCTCGAAACATGGAAATAAAGTGCTTCAATCCAGTCGTCTCTATGTCCACAATATTGACTATGCTACAACTGAGGATGAATTGGCAGGGTTCTTCAGTGAATTTGGAGATGTCAAAAAGGTTCATCTAGTTACTGATAAAGAGACTAAACGGTCCAAAGGTTTTGGCTATGTTTTCTATAGCACTCCAGAAGAAGCTGCGAGAGCTTTGGAAAAATTGGACCATCCTATTTTCCAAGGGAGAGTATTGCATGTAGTTCCTGCAGAAACAAGACATGATTTGGAAAAATCTGTTTCTGAAGGCAAAGGCAAAACATACAAGCAGCAGAGGGTGGAACAGAGAAAGACATTAGAATCCAGTGGCCATACTCAAGCATGGAACAGTTTGCATATGCGTTCTGACACTGTCGTTGAATACATTGCTAGGAAATACGGGGTCAGTAAAAGCAACTTATTAAGTTGTGAAGCTGATGATCTTGCTGTTCGGAAAAAACAAAAGAAGTCTCACTTTAATCAAGATTGCCAAGTCAATGACTTTGCTCTTTGGAAAACTCAAGTCATAGCAGACACTAAGAAAGCTCTAACAAATGCGGGAGTTAATGTGGCTTCCTTGGAGGCATTCAGTTCTGGAAAATCTGAAGGTGGAAAGAGAAGCAACCTTATATTACTGGTCAAGAATTTGCCTTTCAGCTCGAGCAAAGTTGATCTCCTCAAGATGTTTGGTAGATTTGGGAGTATTGAAAAAATTATCCTTCCCCCAACAAAAACATTAGCCTTGGTTTTCTTTCTTGAGCCAGCTGAAGCTCGTGTAGCATTTGATTGCTTGCGCTACAAGCGTTACAGAGATGCTTTGTTGTATTTGGAGTGGGCTCCGAGCACAATTCTTAGTCAAGATCCAACACCTAATGGTGATTCAAAGAGTACTATGGTAGTTGGGAGCCAAGAAGTTACAAAGGGATCACTAGAGCAAATTATGCAGATATCCGAAGCTGAAATGGATCCTGAAATAGCTGAGTCACGGACAGTTTATGTCAAAAACCTCAATTTCAAGACAACGGATGAGAGTTTTGGGAAACACATCCGGGAGAACATGAAAGAAGGGAAGCTTTTGAGCAGCAGGATTGTGAAGCACTTGGAAATGGGAAAGTATTTTTCAAGTGGCTATGCATTTGTGGAATTTGATTCTATGGAGACAGCATCAAATGTTTGCCGGGATTTACAGGGTACTGTTTTAGATGGGCATGCGTTAATTATGCAACTTTGCCACATCAAGAATGATGAAAATGTTCTCAAGAAAACCGACAACGATAAAAGTTCCACAAAACTAATAGTAAGAAATGTCGCATTTGAGGCAACGGAGAAGGATCTTAGGCAGCTGTTCAACCCATTTGGTCAGATAAAAAGTTTAAGGCTCCCAATGAAGCTTGGGAAACACAGAGGTTTTGCATTTGTGGAATTTGTCACTAAACAAGAAGCGCAAAATGCCCTTAAAGCTCTGTCAAGTACCCATTTGTATGGGCGACACTTGGTTCTAGAACGAGCGAAGGAGGGTGAAACGTTAGAAGAACTAAGAAAACGAACAGCTGCTCAATTTGCCACTGACCAAGACGATTTCACAAATCCTACGAGAATTTCGAAGAAAAGAAAGGTCACAACTTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_3337.p1 GENE.S_Transcript_3337~~S_Transcript_3337.p1 ORF type:complete len:836 (+),score=167.51,RRM_1|PF00076.18|5.6e-11,RRM_1|PF00076.18|9.5e-20,RRM_1|PF00076.18|7.6e-06,RRM_1|PF00076.18|9.7e-08,RRM_1|PF00076.18|1.2e-18,RRM_6|PF14259.2|8e-07,RRM_6|PF14259.2|1.6e-14,RRM_6|PF14259.2|6.9e-07,RRM_6|PF14259.2|5.6e-07,RRM_6|PF14259.2|1.9e-12,RRM_5|PF13893.2|0.58,RRM_5|PF13893.2|6.4e+03,RRM_5|PF13893.2|1e-08,RRM_5|PF13893.2|0.0044,RRM_5|PF13893.2|64,RRM_5|PF13893.2|1.7e-10,RRM_occluded|PF16842.1|44,RRM_occluded|PF16842.1|0.05,RRM_occluded|PF16842.1|76,RRM_occluded|PF16842.1|8.6e+02,RRM_occluded|PF16842.1|3e+02,Nup35_RRM_2|PF14605.2|2.7,Nup35_RRM_2|PF14605.2|2.7,Nup35_RRM_2|PF14605.2|7.9e+02,Nup35_RRM_2|PF14605.2|49 S_Transcript_3337:423-2930(+)
MAVSNDNNNISKKSSRICVKNLPQRLTLDDLKQFFSQKGELTDAKLILNKDGKSRVAYIGYRTEQEAEEAIKYFNRSYLKSSSITCEFSLSYGDPNIPRPWGQRSKEGNKLAGRKRSFAGSGANIGKNTPLKCNESDDPKFREFYHVVQPRSKTKFWADDVMQPTFNQDCQVNETVRKKQKKSHFNQDCQVNETVRKKPKKCISEFSFNKTVPEENWMDDGRSAQLQNTARDYILTDQKYFESKIRMDWSDSEIDIDENGIDFSQDHGGLCYEETNSGNLCCSSKHGNKVLQSSRLYVHNIDYATTEDELAGFFSEFGDVKKVHLVTDKETKRSKGFGYVFYSTPEEAARALEKLDHPIFQGRVLHVVPAETRHDLEKSVSEGKGKTYKQQRVEQRKTLESSGHTQAWNSLHMRSDTVVEYIARKYGVSKSNLLSCEADDLAVRKKQKKSHFNQDCQVNDFALWKTQVIADTKKALTNAGVNVASLEAFSSGKSEGGKRSNLILLVKNLPFSSSKVDLLKMFGRFGSIEKIILPPTKTLALVFFLEPAEARVAFDCLRYKRYRDALLYLEWAPSTILSQDPTPNGDSKSTMVVGSQEVTKGSLEQIMQISEAEMDPEIAESRTVYVKNLNFKTTDESFGKHIRENMKEGKLLSSRIVKHLEMGKYFSSGYAFVEFDSMETASNVCRDLQGTVLDGHALIMQLCHIKNDENVLKKTDNDKSSTKLIVRNVAFEATEKDLRQLFNPFGQIKSLRLPMKLGKHRGFAFVEFVTKQEAQNALKALSSTHLYGRHLVLERAKEGETLEELRKRTAAQFATDQDDFTNPTRISKKRKVTTY*

Click here to download the sequence:
Link to NCBI Protein BLAST