Transcript Information: S_Transcript_333752.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4193600658763
Replicate 20.4412557911503
Replicate 30.12295157389067
Condition 2: 8 Hour
Replicate 11.1373541502471
Replicate 21.0440196031872
Replicate 32.4157960618979
Condition 3: 24 Hour
Replicate 10
Replicate 20.3021841543513
Replicate 30.16814696270077


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_333752.p1 GENE.S_Transcript_333752~~S_Transcript_333752.p1 ORF type:complete len:150 (+),score=23.74,UBN2_3|PF14244.2|4e-18,Retrotrans_gag|PF03732.13|9.4e-09 S_Transcript_333752:1651-2100(+)
ATGGTAATCGCTTGGCTTCTGAACTCTATGATTGATTCTGTTAGACGTTCTGTTCTTTATATTGATTCTGCTTTTGCAATGTGGATTCATCTCAAGAATAGATTTTCTGTGAGCAATGGTTCTAGAAAATACAAGATTAATAAGGAGATATATGATCTCAGACAAAATGGAACTAGTATCAATGATTTTTACACAAGAATGAGGTGTCTCTGGGAGGAACTAGATTCCATGAATTCTTTGCCTAAGATAACTAACTTTACTGATGAGATTAAGGTGTTCTTGAAAGCCTTAGACAAGCAACAAGAGGAACACAGATTGTTTCAGTTTCTTAATGGCCTTGATCACATTTACAATACTCAAAGAAGCAATTTATTGTTTATGAATCCTCTTCCTTCTGTGGAAGTTGCTTGCTTAATCTTCAGCAAGAGGAGACTCAAAGAGATGTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_333752.p1 GENE.S_Transcript_333752~~S_Transcript_333752.p1 ORF type:complete len:150 (+),score=23.74,UBN2_3|PF14244.2|4e-18,Retrotrans_gag|PF03732.13|9.4e-09 S_Transcript_333752:1651-2100(+)
MVIAWLLNSMIDSVRRSVLYIDSAFAMWIHLKNRFSVSNGSRKYKINKEIYDLRQNGTSINDFYTRMRCLWEELDSMNSLPKITNFTDEIKVFLKALDKQQEEHRLFQFLNGLDHIYNTQRSNLLFMNPLPSVEVACLIFSKRRLKEMC*

Click here to download the sequence:
Link to NCBI Protein BLAST