Transcript Information: S_Transcript_334830.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value2E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3518115227339
Replicate 26.244185723825
Replicate 36.1475786945335
Condition 2: 8 Hour
Replicate 12.8165609852817
Replicate 24.2211035169296
Replicate 32.9493625616955
Condition 3: 24 Hour
Replicate 14.8086221520176
Replicate 24.703809949808
Replicate 37.4555728744683


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_334830.p1 GENE.S_Transcript_334830~~S_Transcript_334830.p1 ORF type:5prime_partial len:159 (-),score=20.63 S_Transcript_334830:139-615(-)
CAAGAAACCCTTGAGGCTCTCTACCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTCGAGTTGAAATTGAGGTGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTTAGGCGGCAGTCCACCTATGCTGATGCCCAGGAAGACCCTTCGCAGGTGTTTGCTCTGGCCAGCATTTGGTTCCTGATCTTTGTGTTTGGTGGTTCTGTATGTCTTTTGCCCATCATGTACACTATTTTTCTAGCTTATCAAGACATGTTTAACTCTGAAGGAGTCTACCTCAGCCAATCATCGACAGTGGAGTCTCTTGCCATGCTAAATTGTGTGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCAATTGCATCAGCTTCTGGTAATGTGGCTTGCCATCCTTTTCTTCTTGTTTGGCTCTATATCTTGGACCAATGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_334830.p1 GENE.S_Transcript_334830~~S_Transcript_334830.p1 ORF type:5prime_partial len:159 (-),score=20.63 S_Transcript_334830:139-615(-)
QETLEALYRQARDAYYSGTPLIVDDMFDRVELKLRWYGSKYVVKYPRCSFRRQSTYADAQEDPSQVFALASIWFLIFVFGGSVCLLPIMYTIFLAYQDMFNSEGVYLSQSSTVESLAMLNCVLFMLLGSAIGCPIASASGNVACHPFLLVWLYILDQC*

Click here to download the sequence:
Link to NCBI Protein BLAST