Transcript Information: S_Transcript_33490.p1


Annotated TAIR IDAT5G02840.1
Annotated Gene NameLHY/CCA1-like 1
Annotated Gene Symbol(s)LCL1
Annotation TypeOrtholog
Chromosome Positionchr5:648794-651212 | Forward length=293
E-Value5E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3492552574887
Replicate 23.9773056005044
Replicate 33.6383629008464
Condition 2: 8 Hour
Replicate 19.139452993057
Replicate 24.1852097795407
Replicate 36.0902421728518
Condition 3: 24 Hour
Replicate 11.6346511455547
Replicate 21.5417558895474
Replicate 32.7452565338902


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_33490.p1 GENE.S_Transcript_33490~~S_Transcript_33490.p1 ORF type:complete len:294 (+),score=27.87,Myb_DNA-binding|PF00249.27|6.2e-10 S_Transcript_33490:339-1220(+)
ATGGTGTCGATGAATCCGGGTTCACCGGAAGGGTTTTACTTGGATGCCGATGGGATGACGTTGCCGGGATTGAACCCGTTCTCGGCGGTGCCACCGGCGAATTCACCGGCGATGAATACGGCGTCGTCTAGTGCCGATGATTCGACTAGTAAGAAAGTAAGGAAGCCGTATACGATTACCAAATCGAGAGAGAGTTGGACTGAGCCTGAGCATGATAAGTTTCTTGAAGCTCTACAACTCTTTGACCGTGATTGGAAAAAGATTGAAGCTTTTATCGGTTCAAAAACTGTTATTCAGATACGCAGTCACGCTCAGAAATACTTTCTGAAGGTTCAAAAAAGTGGAAGTAATGAGCATCTCCCGCCTCCCCGGCCTAAACGGAAAGCTGCGCATCCATATCCGCAGAAAGCTCCTAAAAATGCTGCATCGGTTCCGCAAGCAACTGGCTCATTACAATCGTCTTCTCTCTTGCTTGAACCTGGACTTCAACGACCAGATTCTGCACCAATGCCCAGATATCCTAAAACCAGCACGATTGCATCTTCTAGGGTTGCTAACTCTCAAACAGTTGGCTTATCGAATGTGACAAAAGGTGATGTGAAATCCACAGGGCTACCCACTGCCAACAACTGTTCGAGCAGTACTGAAAGCACTGCAATGGGACGCACTACTGGTGAAATGAATGAACTACTGAATCATGGACCCCCATTAAGAGGTGATCAGAGAACTTTTGATTTTTCTTTTTCATTGGCTAACAAGATCAAGATTCAAGTAAATTACTTCTTGGCTAGGCAATACATATACCCGCTTCTTGTGGTTATATATGTAGTCCTTACTATAGATACATTTATATCTTCACATGAAAAGGATATGCTTTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_33490.p1 GENE.S_Transcript_33490~~S_Transcript_33490.p1 ORF type:complete len:294 (+),score=27.87,Myb_DNA-binding|PF00249.27|6.2e-10 S_Transcript_33490:339-1220(+)
MVSMNPGSPEGFYLDADGMTLPGLNPFSAVPPANSPAMNTASSSADDSTSKKVRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGSNEHLPPPRPKRKAAHPYPQKAPKNAASVPQATGSLQSSSLLLEPGLQRPDSAPMPRYPKTSTIASSRVANSQTVGLSNVTKGDVKSTGLPTANNCSSSTESTAMGRTTGEMNELLNHGPPLRGDQRTFDFSFSLANKIKIQVNYFLARQYIYPLLVVIYVVLTIDTFISSHEKDMLS*

Click here to download the sequence:
Link to NCBI Protein BLAST